Rh7BG364800

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000708
Physical Location & Seq
Reverse (-)
38913203 .. 38930599
17397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG364800.1

Sequence Viewer

Length: 1074 bp
ATGGAGCGAGACGGCGAGACGGCGACTGAGTCTTCTCCGGCGAGGGTTGGAGGAGTTGCGATTCTGGCATCGTCTGTGGATCAACTCGGAGATGTGCTTTTCCAGGTTATCGGAGCAAGATTCTTTGGTCGCGAGGGCAATAATATAACCTCCACAAGAGATGATGTCAACCATGAAACACACACTGCTTTGACCATTGTCAGAAGACATGTCGCAGATGCATCATTCCTTGATTTTGCCGAAGGAGTCTCATCCGGAATAGCTCCCAAAGCCAGACTTGCAGTCTACAAGGTTCCTTCGTCTACCTTCTTCATCCGAAACCTAATTCCGTCTTCTGCAATTGCGATGGAGAACCTTCACGGCAACTCGAGAGTTCCGAAATTGAGCCCGCAGCACTTGATGAAAGGAGGAAGCTTCGAGAATGCGGACCTCGACTCGCCGCTCCTCAGGTACCTGCGAGGCTCTCAGTCGCCGGTCGACGGCTTCAAGCAGCGGCGCCACCCGCTCTCTCCGGTGGAGAATCTGATGGCGGCGGCGAGGTCTTCACCGGTGAGAACGGTGCCGAGGGAGGAGGTTCTGGTGATGGACGGCGTTTTGGTCACCGATGGAAAGAGGAGTTCGAGGTCGGGTGGTTCTGGTTCGCCTTCATCTACTTCTTCGGATTCTTCGGGGAAGACTCTCTACAAAGGCCAGTTTGTACTTGGAAAAGAAAATTTGCGTCCAACTCGTTTTCCTGGCAAGAACAAATCTGAGTTGTGCAAGTCTACACCTAGATCAGGATCATGCACACCCAGCCCGAAGTCCCGCCTTGTCTATCAGATCATGGCATCAGCTGTTACTGAAGCAGCAGCAGCAGCAGCAGCCTTGTCTCCAAAACTGAATAGGACCAGCAAGACCCCCATTACTGTTATCTGCTGCAGAGACTGGTCACCCCAAGATGACATTGAGGTTGTCTTGCCTTCTTCAACTGAAAAACCTCCATCAAAGGCAGATGTAGATGAGTACATCACTGCTTCTCTCTATGGTCCTACTACAAGAAGGAGATTGTCAGTGTTTGCTGAAATTTGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

357

Amino Acids

38.33

Weight (kDa)

9.38

Isoelectric Point (pI)

62.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 450
AccB1I GGYRCC 3 cut(s) 450, 495, 559
AccBSI CCGCTC 2 cut(s) 442, 505
AccI GTMKAC 4 cut(s) 285, 302, 477, 764
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 8 cut(s) 389, 425, 440, 493, 503, 530, 533, 805
AclWI GGATC 2 cut(s) 87, 787
AcsI RAATTY 2 cut(s) 712, 1062
AcuI CTGAAG 1 cut(s) 861
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 3 cut(s) 452, 699, 1004
AfiI CCNNNNNNNGG 2 cut(s) 479, 776
AflIII ACRYGT 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 2 cut(s) 487, 966
AhdI GACNNNNNGTC 1 cut(s) 281
AjnI CCWGG 2 cut(s) 102, 733
AluBI AGCT 3 cut(s) 263, 414, 833
AluI AGCT 3 cut(s) 263, 414, 833
Alw26I GTCTC 5 cut(s) 3, 11, 253, 873, 915
AlwI GGATC 2 cut(s) 87, 787
AlwNI CAGNNNCTG 1 cut(s) 924
Ama87I CYCGRG 1 cut(s) 367
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 9 cut(s) 391, 490, 845, 848, 851, 854, 857, 860, 915
ApoI RAATTY 2 cut(s) 712, 1062
AsiGI ACCGGT 1 cut(s) 547
Asp718I GGTACC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 3 cut(s) 427, 885, 1025
AsuHPI GGTGA 5 cut(s) 537, 562, 592, 592, 921
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 3 cut(s) 427, 885, 1025
AxyI CCTNAGG 1 cut(s) 446
BanI GGYRCC 3 cut(s) 450, 495, 559
BanII GRGCYC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BbsI GAAGAC 5 cut(s) 24, 211, 324, 534, 680
BbvI GCAGC 9 cut(s) 403, 502, 857, 860, 863, 866, 869, 872, 902
BccI CCATC 5 cut(s) 340, 520, 577, 599, 988
BceAI ACGGC 5 cut(s) 28, 36, 376, 496, 604
BciT130I CCWGG 2 cut(s) 104, 735
BcoDI GTCTC 5 cut(s) 3, 11, 253, 873, 915
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 1 cut(s) 916
BfoI RGCGCY 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 462
Bme1390I CCNGG 2 cut(s) 104, 735
Bme18I GGWCC 3 cut(s) 427, 885, 1025
BmeRI GACNNNNNGTC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 367
BmgT120I GGNCC 3 cut(s) 427, 885, 1025
BmiI GGNNCC 4 cut(s) 294, 452, 497, 561
BmrFI CCNGG 2 cut(s) 104, 735
BmsI GCATC 4 cut(s) 77, 208, 230, 836
BoxI GACNNNNGTC 1 cut(s) 197
BpiI GAAGAC 5 cut(s) 24, 211, 324, 534, 680
BsaBI GATNNNNATC 1 cut(s) 778
BsaHI GRCGYC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 563
BsaWI WCCGGW 3 cut(s) 254, 511, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 776
Bse118I RCCGGY 2 cut(s) 472, 547
Bse1I ACTGG 2 cut(s) 691, 929
Bse21I CCTNAGG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 778
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 2 cut(s) 104, 735
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 2 cut(s) 251, 312
BseJI GATNNNNATC 1 cut(s) 778
BseLI CCNNNNNNNGG 2 cut(s) 479, 776
BseMII CTCAG 4 cut(s) 18, 460, 479, 741
BseNI ACTGG 2 cut(s) 691, 929
BseRI GAGGAG 4 cut(s) 66, 434, 584, 628
BseXI GCAGC 9 cut(s) 403, 502, 857, 860, 863, 866, 869, 872, 902
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 3 cut(s) 450, 495, 559
BshTI ACCGGT 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 5 cut(s) 38, 255, 473, 512, 548
BslFI GGGAC 1 cut(s) 787
BslI CCNNNNNNNGG 2 cut(s) 479, 776
BsmAI GTCTC 5 cut(s) 3, 11, 253, 873, 915
BsmBI CGTCTC 2 cut(s) 3, 11
BsmFI GGGAC 1 cut(s) 787
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 690
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 4 cut(s) 79, 773, 779, 819
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 8 cut(s) 389, 425, 440, 493, 503, 530, 533, 805
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 4 cut(s) 19, 459, 478, 742
BspEI TCCGGA 1 cut(s) 254
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 294, 452, 497, 561
BspMAI CTGCAG 1 cut(s) 920
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 2 cut(s) 87, 787
BspT107I GGYRCC 3 cut(s) 450, 495, 559
BsrBI CCGCTC 2 cut(s) 442, 505
BsrFI RCCGGY 2 cut(s) 472, 547
BsrI ACTGG 2 cut(s) 691, 929
BssAI RCCGGY 2 cut(s) 472, 547
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 4 cut(s) 79, 773, 779, 819
BssNI GRCGYC 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 104, 735
Bst4CI ACNGT 2 cut(s) 559, 907
BstACI GRCGYC 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 27, 446, 465, 750
BstEII GGTNACC 2 cut(s) 598, 927
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 251, 312
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 4 cut(s) 82, 776, 782, 822
BstMAI GTCTC 5 cut(s) 3, 11, 253, 873, 915
BstMBI GATC 4 cut(s) 79, 773, 779, 819
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 9 cut(s) 65, 269, 278, 502, 792, 851, 854, 857, 860
BstNI CCWGG 2 cut(s) 104, 735
BstNSI RCATGY 1 cut(s) 212
BstPAI GACNNNNGTC 1 cut(s) 197
BstPI GGTNACC 2 cut(s) 598, 927
BstSCI CCNGG 2 cut(s) 102, 733
BstSFI CTRYAG 1 cut(s) 916
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 9 cut(s) 403, 502, 857, 860, 863, 866, 869, 872, 902
BstV2I GAAGAC 5 cut(s) 24, 211, 324, 534, 680
Bsu36I CCTNAGG 1 cut(s) 446
BsuRI GGCC 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 2 cut(s) 251, 312
BtsI GCAGTG 2 cut(s) 183, 1008
BtsIMutI CAGTG 3 cut(s) 183, 1008, 1056
BtuMI TCGCGA 1 cut(s) 132
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 1 cut(s) 389
CaiI CAGNNNCTG 1 cut(s) 924
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 2 cut(s) 472, 547
Cfr13I GGNCC 3 cut(s) 427, 885, 1025
CseI GACGC 1 cut(s) 707
Csp6I GTAC 3 cut(s) 451, 698, 1003
CspAI ACCGGT 1 cut(s) 547
CviAII CATG 4 cut(s) 173, 209, 783, 823
CviQI GTAC 3 cut(s) 451, 698, 1003
DdeI CTNAG 4 cut(s) 27, 446, 465, 750
DinI GGCGCC 1 cut(s) 497
DpnI GATC 4 cut(s) 81, 775, 781, 821
DpnII GATC 4 cut(s) 79, 773, 779, 819
DriI GACNNNNNGTC 1 cut(s) 281
Eam1105I GACNNNNNGTC 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 389
Eco47I GGWCC 3 cut(s) 427, 885, 1025
Eco57I CTGAAG 1 cut(s) 861
Eco81I CCTNAGG 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 367
Eco91I GGTNACC 2 cut(s) 598, 927
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO65I GGTNACC 2 cut(s) 598, 927
EcoRII CCWGG 2 cut(s) 102, 733
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 389
EgeI GGCGCC 1 cut(s) 497
EheI GGCGCC 1 cut(s) 497
Esp3I CGTCTC 2 cut(s) 3, 11
FaeI CATG 4 cut(s) 176, 212, 786, 826
FaiI YATR 7 cut(s) 146, 174, 210, 784, 824, 1023, 1072
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 787
FatI CATG 4 cut(s) 172, 208, 782, 822
FauI CCCGC 3 cut(s) 396, 510, 812
FblI GTMKAC 4 cut(s) 285, 302, 477, 764
FokI GGATG 2 cut(s) 238, 299
FriOI GRGCYC 1 cut(s) 389
FspBI CTAG 1 cut(s) 771
GlaI GCGC 1 cut(s) 497
GsaI CCCAGC 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 1 cut(s) 690
HapII CCGG 5 cut(s) 38, 255, 473, 512, 548
HgaI GACGC 1 cut(s) 707
HhaI GCGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 4 cut(s) 176, 212, 786, 826
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HincII GTYRAC 2 cut(s) 169, 478
HindII GTYRAC 2 cut(s) 169, 478
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 8 cut(s) 29, 61, 120, 246, 434, 520, 662, 676
HpaII CCGG 5 cut(s) 38, 255, 473, 512, 548
HphI GGTGA 5 cut(s) 537, 562, 592, 592, 921
Hpy166II GTNNAC 5 cut(s) 169, 286, 303, 478, 765
Hpy188I TCNGA 9 cut(s) 89, 113, 203, 317, 378, 525, 661, 751, 819
Hpy188III TCNNGA 5 cut(s) 131, 255, 369, 418, 777
Hpy8I GTNNAC 5 cut(s) 169, 286, 303, 478, 765
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 7 cut(s) 236, 306, 316, 365, 654, 969, 1032
HpyCH4III ACNGT 2 cut(s) 559, 907
HpyCH4V TGCA 6 cut(s) 221, 281, 338, 759, 786, 918
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 269, 278, 502, 792, 851, 854, 857, 860
HpyF3I CTNAG 4 cut(s) 27, 446, 465, 750
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 4 cut(s) 176, 212, 786, 826
HspAI GCGC 1 cut(s) 496
KasI GGCGCC 1 cut(s) 495
Kpn2I TCCGGA 1 cut(s) 254
KpnI GGTACC 1 cut(s) 454
Kzo9I GATC 4 cut(s) 79, 773, 779, 819
LmnI GCTCC 4 cut(s) 4, 113, 268, 447
Lsp1109I GCAGC 9 cut(s) 403, 502, 857, 860, 863, 866, 869, 872, 902
LweI GCATC 4 cut(s) 77, 208, 230, 836
MaeI CTAG 1 cut(s) 771
MaeIII GTNAC 3 cut(s) 598, 835, 927
MalI GATC 4 cut(s) 81, 775, 781, 821
MbiI CCGCTC 2 cut(s) 442, 505
MboI GATC 4 cut(s) 79, 773, 779, 819
MboII GAAGA 9 cut(s) 24, 216, 301, 324, 534, 648, 657, 685, 954
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 5 cut(s) 324, 339, 380, 712, 1062
Mly113I GGCGCC 1 cut(s) 496
MlyI GAGTC 4 cut(s) 38, 255, 428, 670
MmeI TCCRAC 2 cut(s) 28, 746
Mph1103I ATGCAT 1 cut(s) 223
MroI TCCGGA 1 cut(s) 254
MspA1I CMGCKG 2 cut(s) 493, 833
MspI CCGG 5 cut(s) 38, 255, 473, 512, 548
MspR9I CCNGG 2 cut(s) 104, 735
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 104, 735
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 9 cut(s) 65, 269, 278, 502, 792, 851, 854, 857, 860
NarI GGCGCC 1 cut(s) 496
NdeII GATC 4 cut(s) 79, 773, 779, 819
NlaIII CATG 4 cut(s) 176, 212, 786, 826
NlaIV GGNNCC 4 cut(s) 294, 452, 497, 561
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 598, 927
NruI TCGCGA 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 212
PaeR7I CTCGAG 1 cut(s) 367
PciI ACATGT 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 4 cut(s) 61, 120, 520, 662
PflFI GACNNNGTC 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 547
PleI GAGTC 4 cut(s) 37, 254, 428, 670
PluTI GGCGCC 1 cut(s) 499
PpsI GAGTC 4 cut(s) 37, 254, 428, 670
PscI ACATGT 1 cut(s) 208
PshAI GACNNNNGTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 102, 733
PspEI GGTNACC 2 cut(s) 598, 927
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 2 cut(s) 102, 733
PspN4I GGNNCC 4 cut(s) 294, 452, 497, 561
PspPI GGNCC 3 cut(s) 427, 885, 1025
PstI CTGCAG 1 cut(s) 920
PstNI CAGNNNCTG 1 cut(s) 924
PsyI GACNNNGTC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 833
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 3 cut(s) 452, 699, 1004
RsaNI GTAC 3 cut(s) 451, 698, 1003
SalI GTCGAC 1 cut(s) 476
Sau3AI GATC 4 cut(s) 79, 773, 779, 819
Sau96I GGNCC 3 cut(s) 427, 885, 1025
SchI GAGTC 4 cut(s) 38, 255, 428, 670
ScrFI CCNGG 2 cut(s) 104, 735
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 4 cut(s) 77, 208, 230, 836
SfcI CTRYAG 1 cut(s) 916
SfoI GGCGCC 1 cut(s) 497
Sfr274I CTCGAG 1 cut(s) 367
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 3 cut(s) 427, 885, 1025
SlaI CTCGAG 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 5 cut(s) 324, 339, 380, 712, 1062
SsiI CCGC 8 cut(s) 389, 425, 440, 493, 503, 530, 533, 805
SspDI GGCGCC 1 cut(s) 495
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 102, 733
TaaI ACNGT 2 cut(s) 559, 907
TaqI TCGA 5 cut(s) 368, 417, 432, 477, 620
TasI AATT 5 cut(s) 324, 339, 380, 712, 1062
TatI WGTACW 2 cut(s) 697, 1002
TauI GCSGC 4 cut(s) 442, 496, 533, 536
TfiI GAWTC 4 cut(s) 61, 120, 520, 662
TscAI CASTG 3 cut(s) 190, 1015, 1056
TseFI GTSAC 2 cut(s) 598, 927
TseI GCWGC 9 cut(s) 391, 490, 845, 848, 851, 854, 857, 860, 915
Tsp45I GTSAC 2 cut(s) 598, 927
TspDTI ATGAA 4 cut(s) 189, 301, 416, 636
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 3 cut(s) 190, 1015, 1056
Tth111I GACNNNGTC 1 cut(s) 28
VpaK11BI GGWCC 3 cut(s) 427, 885, 1025
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 2 cut(s) 712, 1062
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 367
XmiI GTMKAC 4 cut(s) 285, 302, 477, 764
XspI CTAG 1 cut(s) 771
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.