Rorug07G0163400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000708
Physical Location & Seq
Reverse (-)
13128936 .. 13130099
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0163400.1

Sequence Viewer

Length: 570 bp
ATGGCAGTAAGGAACGTAGATGCTGGTACCAATGTCAAAGAAGCAATCCTTAAAGGAATCTCCAATGCTAAGATTGATGTCATGGAGTTAGATCTCAGCTCAATGGCATCTGTAAGAAAATTTGCAGAAGAGTATAATTCCAAAGGCCTTCCATTGAATATCCTTATTAACAATGCAGGTGTTATGGTAGATAAATTTAAGCTATCTCAAGACAACATAGAACTCGATTTTGCAACTAATCATTTAGGTCATTTTCATCCTGGAACCATTCGCACTAATATTATGCGTAATGATATCCATGTAAAGTGTGCTCAGGATAATATTTATGAGCAAAACTATTCAGCAGGGAGCGGCAACCACATGCTTTTTGGGACTGAAATACTGAATCCACAAGTTAAGGGAGTACGTGGCGAATACTATGTGGACTGTAACATCGCCAAACCGAGCTCTCAGGCAAATGATGCAGATTTGGCCACGAGACTCTGGGATTTTAGCTTGAGTTTGACCAATCTCAGTAGTAGTGGAGGTTTAAGTCTTTTTCTGGGCCATGTTGTAGGGAGCTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.64

Weight (kDa)

5.82

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 87 7.5e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 351
AciI CCGC 1 cut(s) 351
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 119, 194
AfaI GTAC 2 cut(s) 28, 405
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 5 cut(s) 99, 202, 447, 495, 561
AluI AGCT 5 cut(s) 99, 202, 447, 495, 561
Alw21I GWGCWC 2 cut(s) 313, 449
Alw26I GTCTC 1 cut(s) 472
AoxI GGCC 3 cut(s) 145, 471, 544
ApoI RAATTY 2 cut(s) 119, 194
Asp718I GGTACC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 475
Bbv12I GWGCWC 2 cut(s) 313, 449
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 91
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 28, 265
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 3 cut(s) 10, 116, 451
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 192, 517
BsaAI YACGTR 1 cut(s) 407
BseBI CCWGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 4 cut(s) 109, 326, 464, 526
BshFI GGCC 3 cut(s) 147, 473, 546
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 313, 449
BslFI GGGAC 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 3 cut(s) 147, 473, 546
Bsp1286I GDGCHC 2 cut(s) 313, 449
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 351
BspANI GGCC 3 cut(s) 147, 473, 546
BspCNI CTCAG 4 cut(s) 108, 325, 463, 525
BspLI GGNNCC 2 cut(s) 28, 265
BspMI ACCTGC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 351
BssMI GATC 1 cut(s) 91
BssSI CACGAG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 69, 95, 312, 450, 512
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 461, 470
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 3 cut(s) 147, 473, 546
BtgZI GCGATG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 27, 404
CviAII CATG 4 cut(s) 82, 299, 361, 548
CviJI RGCY 8 cut(s) 99, 147, 202, 447, 473, 495, 546, 561
CviKI_1 RGCY 8 cut(s) 99, 147, 202, 447, 473, 495, 546, 561
CviQI GTAC 2 cut(s) 27, 404
DdeI CTNAG 5 cut(s) 69, 95, 312, 450, 512
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 449
FaeI CATG 4 cut(s) 85, 302, 364, 551
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 385
FatI CATG 4 cut(s) 81, 298, 360, 547
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 352
HaeIII GGCC 3 cut(s) 147, 473, 546
Hin1II CATG 4 cut(s) 85, 302, 364, 551
HinfI GANTC 3 cut(s) 57, 385, 480
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 209, 314
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 15, 406
HpyCH4V TGCA 4 cut(s) 125, 176, 233, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 470
HpyF3I CTNAG 5 cut(s) 69, 95, 312, 450, 512
HpySE526I ACGT 2 cut(s) 15, 406
Hsp92II CATG 4 cut(s) 85, 302, 364, 551
KpnI GGTACC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 348, 558
LpnPI CCDG 9 cut(s) 9, 162, 246, 273, 299, 330, 437, 469, 527
LweI GCATC 3 cut(s) 10, 116, 451
MaeII ACGT 2 cut(s) 15, 406
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 351
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 2 cut(s) 313, 449
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 4 cut(s) 119, 136, 194, 565
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 1 cut(s) 474
MnlI CCTC 1 cut(s) 518
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 6 cut(s) 51, 168, 198, 396, 530, 568
Msp20I TGGCCA 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 461, 470
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 85, 302, 364, 551
NlaIV GGNNCC 2 cut(s) 28, 265
NspI RCATGY 1 cut(s) 364
PaqCI CACCTGC 1 cut(s) 167
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 2 cut(s) 57, 385
PfoI TCCNGGA 1 cut(s) 259
PkrI GCNGC 1 cut(s) 353
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Ppu21I YACGTR 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 28, 265
PspPI GGNCC 1 cut(s) 544
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 2 cut(s) 28, 405
RsaNI GTAC 2 cut(s) 27, 404
SacI GAGCTC 1 cut(s) 449
SaqAI TTAA 6 cut(s) 51, 168, 198, 396, 530, 568
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 2 cut(s) 313, 449
SfaNI GCATC 3 cut(s) 10, 116, 451
SmlI CTYRAG 2 cut(s) 207, 496
SmoI CTYRAG 2 cut(s) 207, 496
Sse9I AATT 4 cut(s) 119, 136, 194, 565
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 351
SspI AATATT 2 cut(s) 280, 322
SstI GAGCTC 1 cut(s) 449
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 18, 409
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 119, 136, 194, 565
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 57, 385
Tru1I TTAA 6 cut(s) 51, 168, 198, 396, 530, 568
Tru9I TTAA 6 cut(s) 51, 168, 198, 396, 530, 568
TspDTI ATGAA 1 cut(s) 245
XapI RAATTY 2 cut(s) 119, 194
XceI RCATGY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.