Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Forward (+)

48177778 .. 48181244

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG423100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAACAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTCGCGCCCCTGCAGAATCTGATCGCGCCGCAGACGGAGGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAGAGGCCAGTTTGTACATGGAAAAGAAAATTTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCTGAGGCACAGATGTGCAAGTGTACAAGCAGCTCAGGATTATCCACACCCAGCCCAAAGTCCCACTTTGCCCATCAGGTCATGGCATCAGCTGCTACAGCAGCAGCAGCAGCTTTAACCTCATTGCCAAAGCCAAAGAACACCAGTGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCGAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAAATACCTTCATCGAAGGAAGATGTGTATGCAGCCTGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

182

Amino Acids

19.52

Weight (kDa)

7.67

Isoelectric Point (pI)

74.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	73
AccII	CGCG	2 cut(s)	77, 98
AciI	CCGC	3 cut(s)	52, 71, 101
AcsI	RAATTY	2 cut(s)	172, 534
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	50, 159, 232
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	135, 240, 299, 320, 378
AluI	AGCT	5 cut(s)	135, 240, 299, 320, 378
Alw26I	GTCTC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	8 cut(s)	237, 299, 308, 311, 314, 317, 378, 464
ApoI	RAATTY	2 cut(s)	172, 534
AspLEI	GCGC	2 cut(s)	79, 100
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	8 cut(s)	249, 286, 320, 323, 326, 329, 365, 476
BccI	CCATC	2 cut(s)	288, 398
BceAI	ACGGC	3 cut(s)	39, 130, 154
BcoDI	GTCTC	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	83, 303
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	187, 302
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	151, 351, 392
Bse3DI	GCAATG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	4 cut(s)	38, 201, 255, 473
BseNI	ACTGG	3 cut(s)	151, 351, 392
BseXI	GCAGC	8 cut(s)	249, 286, 320, 323, 326, 329, 365, 476
BseYI	CCCAGC	2 cut(s)	257, 476
BsgI	GTGCAG	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	77, 98
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	350
Bsp1407I	TGTACA	2 cut(s)	157, 230
Bsp143I	GATC	2 cut(s)	33, 93
BspACI	CCGC	3 cut(s)	52, 71, 101
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	4 cut(s)	37, 202, 254, 474
BspFNI	CGCG	2 cut(s)	77, 98
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	329
BsrGI	TGTACA	2 cut(s)	157, 230
BsrI	ACTGG	3 cut(s)	151, 351, 392
BssMI	GATC	2 cut(s)	33, 93
BssNI	GRCGYC	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	66, 370, 525
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	2 cut(s)	157, 230
BstC8I	GCNNGC	2 cut(s)	75, 469
BstDEI	CTNAG	4 cut(s)	24, 210, 241, 482
BstEII	GGTNACC	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	77, 98
BstHHI	GCGC	2 cut(s)	79, 100
BstKTI	GATC	2 cut(s)	36, 96
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	33, 93
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 147, 299, 305, 308, 314, 317, 473
BstPI	GGTNACC	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	83, 303
BstUI	CGCG	2 cut(s)	77, 98
BstV1I	GCAGC	8 cut(s)	249, 286, 320, 323, 326, 329, 365, 476
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	3 cut(s)	358, 471, 521
Cac8I	GCNNGC	2 cut(s)	75, 469
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	79, 100
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	49, 158, 231
CviAII	CATG	2 cut(s)	161, 289
CviQI	GTAC	3 cut(s)	49, 158, 231
DdeI	CTNAG	4 cut(s)	24, 210, 241, 482
DpnI	GATC	2 cut(s)	35, 95
DpnII	GATC	2 cut(s)	33, 93
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	390
FaeI	CATG	2 cut(s)	164, 292
FaiI	YATR	4 cut(s)	162, 290, 462, 495
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	160, 288
FokI	GGATG	1 cut(s)	165
GlaI	GCGC	2 cut(s)	78, 99
GsaI	CCCAGC	2 cut(s)	261, 480
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	2 cut(s)	79, 100
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	164, 292
Hin6I	GCGC	2 cut(s)	77, 98
HinP1I	GCGC	2 cut(s)	77, 98
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	88, 484
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	2 cut(s)	62, 231
Hpy188I	TCNGA	2 cut(s)	93, 211
Hpy188III	TCNNGA	2 cut(s)	144, 243
Hpy8I	GTNNAC	2 cut(s)	62, 231
Hpy99I	CGWCG	2 cut(s)	41, 60
HpyAV	CCTTC	3 cut(s)	442, 450, 504
HpyCH4III	ACNGT	3 cut(s)	66, 370, 525
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	85, 178, 225, 381, 464, 471
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 147, 299, 305, 308, 314, 317, 473
HpyF3I	CTNAG	4 cut(s)	24, 210, 241, 482
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	164, 292
HspAI	GCGC	2 cut(s)	77, 98
Kzo9I	GATC	2 cut(s)	33, 93
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	8 cut(s)	249, 286, 320, 323, 326, 329, 365, 476
LweI	GCATC	2 cut(s)	187, 302
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	2 cut(s)	35, 95
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	2 cut(s)	33, 93
MboII	GAAGA	3 cut(s)	34, 410, 464
MluCI	AATT	3 cut(s)	172, 363, 534
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	2 cut(s)	206, 452
MnlI	CCTC	7 cut(s)	11, 103, 140, 205, 337, 406, 435
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	2 cut(s)	299, 378
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	2 cut(s)	77, 98
MwoI	GCNNNNNNNGC	8 cut(s)	76, 147, 299, 305, 308, 314, 317, 473
NdeII	GATC	2 cut(s)	33, 93
NlaIII	CATG	2 cut(s)	164, 292
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	390
OliI	CACNNNNGTG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	88
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	390
PspFI	CCCAGC	2 cut(s)	257, 476
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	299, 378
RsaI	GTAC	3 cut(s)	50, 159, 232
RsaNI	GTAC	3 cut(s)	49, 158, 231
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	323
Sau3AI	GATC	2 cut(s)	33, 93
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	493
SfaNI	GCATC	2 cut(s)	187, 302
SfcI	CTRYAG	2 cut(s)	83, 303
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	172, 363, 534
SsiI	CCGC	3 cut(s)	52, 71, 101
TaaI	ACNGT	3 cut(s)	66, 370, 525
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	36, 446
TasI	AATT	3 cut(s)	172, 363, 534
TatI	WGTACW	2 cut(s)	157, 230
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	3 cut(s)	358, 478, 528
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	8 cut(s)	237, 299, 308, 311, 314, 317, 378, 464
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	3 cut(s)	358, 478, 528
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	172, 534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.