RchiOBHm_Chr7g0236421

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000708
Physical Location & Seq
Forward (+)
61230960 .. 61233750
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21186

Sequence Viewer

Length: 360 bp
ATGGAACAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTCGCGCCCCTGCACAATCTGATCGCGCCGCAGCCGGGTGACGGCGTTTCGGTTGCCGGAAGCTGCGGCTCCAAGGGCCAGTTTGTGCATGGTAAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCAAGTCTACAACTAGCTCAGGATTATGCACACCCAGCCCAAAGTCCCACGTCGCCCATCAGGTCATGGCGTCAGCTGTTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAATAACACCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

119

Amino Acids

12.47

Weight (kDa)

9.61

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 230
AccII CGCG 2 cut(s) 77, 98
AciI CCGC 4 cut(s) 52, 71, 101, 138
AcyI GRCGYC 2 cut(s) 39, 293
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 107, 113
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 4 cut(s) 135, 240, 299, 357
AluI AGCT 4 cut(s) 135, 240, 299, 357
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 6 cut(s) 103, 135, 311, 314, 317, 320
AspLEI GCGC 2 cut(s) 79, 100
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 6 cut(s) 115, 122, 323, 326, 329, 332
BccI CCATC 1 cut(s) 288
BceAI ACGGC 2 cut(s) 39, 130
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 1 cut(s) 237
BisI GCNGC 9 cut(s) 71, 101, 104, 136, 139, 312, 315, 318, 321
BlsI GCNGC 9 cut(s) 72, 102, 105, 137, 140, 313, 316, 319, 322
Bme1390I CCNGG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 39, 293
BsaJI CCNNGG 2 cut(s) 144, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 113
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 144, 210
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 107, 113
BseMII CTCAG 2 cut(s) 38, 255
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 6 cut(s) 115, 122, 323, 326, 329, 332
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 77, 98
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 107, 129
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 107, 113
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 4 cut(s) 52, 71, 101, 138
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 37, 254
BspFNI CGCG 2 cut(s) 77, 98
BspLI GGNNCC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 144, 210
BssMI GATC 2 cut(s) 33, 93
BssNI GRCGYC 2 cut(s) 39, 293
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 39, 293
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 24, 241
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 2 cut(s) 77, 98
BstHHI GCGC 2 cut(s) 79, 100
BstKTI GATC 2 cut(s) 36, 96
BstMBI GATC 2 cut(s) 33, 93
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 2 cut(s) 77, 98
BstV1I GCAGC 6 cut(s) 115, 122, 323, 326, 329, 332
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 2 cut(s) 79, 100
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 161, 289
CviJI RGCY 9 cut(s) 106, 135, 141, 150, 240, 261, 299, 343, 357
CviKI_1 RGCY 9 cut(s) 106, 135, 141, 150, 240, 261, 299, 343, 357
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 24, 241
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco130I CCWWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 164, 292
FaiI YATR 3 cut(s) 162, 250, 290
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 160, 288
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 9 cut(s) 71, 101, 104, 136, 139, 312, 315, 318, 321
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 9 cut(s) 71, 101, 104, 136, 139, 312, 315, 318, 321
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 78, 99
GluI GCNGC 9 cut(s) 71, 101, 104, 136, 139, 312, 315, 318, 321
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 107, 129
HgaI GACGC 1 cut(s) 282
HhaI GCGC 2 cut(s) 79, 100
Hin1I GRCGYC 2 cut(s) 39, 293
Hin1II CATG 2 cut(s) 164, 292
Hin6I GCGC 2 cut(s) 77, 98
HinP1I GCGC 2 cut(s) 77, 98
HincII GTYRAC 2 cut(s) 62, 327
HindII GTYRAC 2 cut(s) 62, 327
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 2 cut(s) 107, 129
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 62, 231, 327
Hpy188I TCNGA 2 cut(s) 93, 211
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 3 cut(s) 62, 231, 327
Hpy99I CGWCG 3 cut(s) 41, 60, 278
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 2 cut(s) 39, 273
HpyCH4V TGCA 5 cut(s) 85, 160, 178, 225, 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
HpyF3I CTNAG 2 cut(s) 24, 241
HpySE526I ACGT 2 cut(s) 39, 273
Hsp92I GRCGYC 2 cut(s) 39, 293
Hsp92II CATG 2 cut(s) 164, 292
HspAI GCGC 2 cut(s) 77, 98
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 8 cut(s) 95, 120, 142, 164, 207, 228, 269, 271
Lsp1109I GCAGC 6 cut(s) 115, 122, 323, 326, 329, 332
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 39, 273
MaeIII GTNAC 2 cut(s) 110, 301
MalI GATC 2 cut(s) 35, 95
MbiI CCGCTC 1 cut(s) 73
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 3 cut(s) 11, 205, 340
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 2 cut(s) 299, 357
MspI CCGG 2 cut(s) 107, 129
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 77, 98
MwoI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
NciI CCSGG 1 cut(s) 108
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 2 cut(s) 164, 292
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 220
PkrI GCNGC 9 cut(s) 72, 102, 105, 137, 140, 313, 316, 319, 322
Ple19I CGATCG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 148
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 2 cut(s) 299, 357
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 9 cut(s) 71, 101, 104, 136, 139, 312, 315, 318, 321
Sau3AI GATC 2 cut(s) 33, 93
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 108
SetI ASST 9 cut(s) 22, 42, 137, 242, 276, 288, 301, 332, 359
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 220
SsiI CCGC 4 cut(s) 52, 71, 101, 138
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 2 cut(s) 42, 276
TaqI TCGA 1 cut(s) 36
TauI GCSGC 3 cut(s) 73, 103, 141
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 6 cut(s) 103, 135, 311, 314, 317, 320
Tsp45I GTSAC 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.