RchiOBHm_Chr7g0231151

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000708
Physical Location & Seq
Forward (+)
54751950 .. 54755194
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20713

Sequence Viewer

Length: 480 bp
ATGGAACAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTTGCGCCCCTGCAGAATCTGATCGCGCCGCAGCCGGGTGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAAGGCCAGTTTGTGCATGGTAAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACCAATCCGAGGCACAGATGTGCAAGTCTACAACTAGCTCAGGATTATGCACACCCAGCCCAAAGTCCCACGTCGCCCATCAGGTCATGGCGTCAGCTGTTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAATAACACCAGCGAGTTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCGCCAACTGAATTACCTTCATCGAACGAAGATGTGGATGCATCCAGCACTGCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

159

Amino Acids

17.13

Weight (kDa)

10.03

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 230
AccII CGCG 1 cut(s) 98
AciI CCGC 4 cut(s) 52, 71, 101, 421
AcyI GRCGYC 2 cut(s) 39, 293
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 107, 113, 211
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 4 cut(s) 135, 240, 299, 374
AluI AGCT 4 cut(s) 135, 240, 299, 374
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 6 cut(s) 103, 311, 314, 317, 320, 374
AspLEI GCGC 2 cut(s) 79, 100
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 122, 380
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 6 cut(s) 115, 323, 326, 329, 332, 361
BccI CCATC 2 cut(s) 288, 394
BceAI ACGGC 3 cut(s) 39, 130, 154
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 9 cut(s) 71, 101, 104, 312, 315, 318, 321, 375, 421
BlsI GCNGC 9 cut(s) 72, 102, 105, 313, 316, 319, 322, 376, 422
Bme1390I CCNGG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 3 cut(s) 187, 447, 469
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 2 cut(s) 39, 293
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 113, 211
Bse1I ACTGG 2 cut(s) 151, 388
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 3 cut(s) 178, 460, 462
BseLI CCNNNNNNNGG 3 cut(s) 107, 113, 211
BseMII CTCAG 2 cut(s) 38, 255
BseNI ACTGG 2 cut(s) 151, 388
BseXI GCAGC 6 cut(s) 115, 323, 326, 329, 332, 361
BseYI CCCAGC 2 cut(s) 257, 472
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 107, 129
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 107, 113, 211
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 33, 93
BspACI CCGC 4 cut(s) 52, 71, 101, 421
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 37, 254
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 87
BsrI ACTGG 2 cut(s) 151, 388
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 33, 93
BssNI GRCGYC 2 cut(s) 39, 293
Bst4CI ACNGT 2 cut(s) 66, 366
BstACI GRCGYC 2 cut(s) 39, 293
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 24, 241
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 3 cut(s) 178, 460, 462
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 79, 100
BstKTI GATC 2 cut(s) 36, 96
BstMBI GATC 2 cut(s) 33, 93
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 6 cut(s) 115, 323, 326, 329, 332, 361
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 1 cut(s) 150
BtgZI GCGATG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 3 cut(s) 178, 460, 462
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 2 cut(s) 79, 100
CseI GACGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 161, 289
CviJI RGCY 9 cut(s) 106, 135, 141, 150, 240, 261, 299, 343, 374
CviKI_1 RGCY 9 cut(s) 106, 135, 141, 150, 240, 261, 299, 343, 374
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 24, 241
DpnI GATC 2 cut(s) 35, 95
DpnII GATC 2 cut(s) 33, 93
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 2 cut(s) 164, 292
FaiI YATR 3 cut(s) 162, 250, 290
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 160, 288
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 9 cut(s) 71, 101, 104, 312, 315, 318, 321, 375, 421
FokI GGATG 3 cut(s) 165, 447, 469
Fsp4HI GCNGC 9 cut(s) 71, 101, 104, 312, 315, 318, 321, 375, 421
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 78, 99
GluI GCNGC 9 cut(s) 71, 101, 104, 312, 315, 318, 321, 375, 421
GsaI CCCAGC 2 cut(s) 261, 476
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 107, 129
HgaI GACGC 1 cut(s) 282
HhaI GCGC 2 cut(s) 79, 100
Hin1I GRCGYC 2 cut(s) 39, 293
Hin1II CATG 2 cut(s) 164, 292
Hin6I GCGC 2 cut(s) 77, 98
HinP1I GCGC 2 cut(s) 77, 98
HincII GTYRAC 2 cut(s) 62, 327
HindII GTYRAC 2 cut(s) 62, 327
HinfI GANTC 1 cut(s) 88
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 2 cut(s) 107, 129
HphI GGTGA 2 cut(s) 122, 380
Hpy166II GTNNAC 3 cut(s) 62, 231, 327
Hpy188I TCNGA 2 cut(s) 93, 211
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 3 cut(s) 62, 231, 327
Hpy99I CGWCG 3 cut(s) 41, 60, 278
HpyAV CCTTC 1 cut(s) 446
HpyCH4III ACNGT 2 cut(s) 66, 366
HpyCH4IV ACGT 2 cut(s) 39, 273
HpyCH4V TGCA 7 cut(s) 85, 160, 178, 225, 252, 377, 460
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
HpyF3I CTNAG 2 cut(s) 24, 241
HpySE526I ACGT 2 cut(s) 39, 273
Hsp92I GRCGYC 2 cut(s) 39, 293
Hsp92II CATG 2 cut(s) 164, 292
HspAI GCGC 2 cut(s) 77, 98
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 33, 93
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 6 cut(s) 115, 323, 326, 329, 332, 361
LweI GCATC 3 cut(s) 187, 447, 469
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 39, 273
MaeIII GTNAC 4 cut(s) 110, 301, 360, 386
MalI GATC 2 cut(s) 35, 95
MboI GATC 2 cut(s) 33, 93
MboII GAAGA 2 cut(s) 34, 460
MluCI AATT 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 4 cut(s) 11, 205, 340, 402
Mph1103I ATGCAT 1 cut(s) 462
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 220
MspA1I CMGCKG 2 cut(s) 299, 374
MspI CCGG 2 cut(s) 107, 129
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 5 cut(s) 76, 147, 258, 317, 320
NciI CCSGG 1 cut(s) 108
NdeII GATC 2 cut(s) 33, 93
NlaIII CATG 2 cut(s) 164, 292
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 110, 386
NsiI ATGCAT 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 220
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 9 cut(s) 72, 102, 105, 313, 316, 319, 322, 376, 422
Ple19I CGATCG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 2 cut(s) 257, 472
PspN4I GGNNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 91
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 2 cut(s) 299, 374
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 9 cut(s) 71, 101, 104, 312, 315, 318, 321, 375, 421
Sau3AI GATC 2 cut(s) 33, 93
ScrFI CCNGG 1 cut(s) 108
SfaNI GCATC 3 cut(s) 187, 447, 469
SfcI CTRYAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 1 cut(s) 430
SsiI CCGC 4 cut(s) 52, 71, 101, 421
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 66, 366
TaiI ACGT 2 cut(s) 42, 276
TaqI TCGA 2 cut(s) 36, 442
TasI AATT 1 cut(s) 430
TauI GCSGC 3 cut(s) 73, 103, 423
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 110, 386
TseI GCWGC 6 cut(s) 103, 311, 314, 317, 320, 374
Tsp45I GTSAC 2 cut(s) 110, 386
TspDTI ATGAA 1 cut(s) 428
TspRI CASTG 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 237
ZraI GACGTC 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.