RchiOBHm_Chr7g0236451

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000708
Physical Location & Seq
Forward (+)
61240003 .. 61240831
829 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21189

Sequence Viewer

Length: 324 bp
ATGTGCGAGGCTACAAGTAGCTCAGGATTATGCACCCCCAGCCTGAAGTCCCACTTAGCCTATCAGGTCATGGCATCCAGAGAAGCAGCAGCAGTAGCCTCATTGCCAAAGCCAAATAACGCCATTGAGACCCTGATTACTGTCATCAGCTGGAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTTCAACTGAGATACCTTCATCGAAGGAAGATGTGGATGCATCCGGCACTGCTTTGCTGAGTCTTGTCTATGGTCCTTCTACTAGAAGAAGGAGATTGCCACTGTTTGCTGAAATTTGCCCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

107

Amino Acids

11.49

Weight (kDa)

4.91

Isoelectric Point (pI)

71.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 65
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 2 cut(s) 21, 150
AluI AGCT 2 cut(s) 21, 150
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 86, 89
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 98, 101
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 87, 90
BlsI GCNGC 2 cut(s) 88, 91
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmsI GCATC 3 cut(s) 83, 223, 245
Bpu10I CCTNAGC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 101
BseGI GGATG 3 cut(s) 74, 236, 238
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 36, 195, 245
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 98, 101
BseYI CCCAGC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 122
BspCNI CTCAG 3 cut(s) 35, 196, 246
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 142, 300
BstDEI CTNAG 4 cut(s) 22, 55, 204, 254
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 3 cut(s) 74, 236, 238
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 39, 95
BstPI GGTNACC 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 98, 101
BstXI CCANNNNNNTGG 1 cut(s) 176
BtsCI GGATG 3 cut(s) 74, 236, 238
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 296
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 1 cut(s) 70
CviJI RGCY 7 cut(s) 11, 21, 42, 59, 98, 112, 150
CviKI_1 RGCY 7 cut(s) 11, 21, 42, 59, 98, 112, 150
DdeI CTNAG 4 cut(s) 22, 55, 204, 254
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 31, 71, 267
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 87, 90
FokI GGATG 3 cut(s) 61, 223, 245
Fsp4HI GCNGC 2 cut(s) 87, 90
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 87, 90
GsaI CCCAGC 1 cut(s) 42
HapII CCGG 1 cut(s) 240
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 24, 78
HpyAV CCTTC 6 cut(s) 148, 207, 214, 222, 279, 282
HpyCH4III ACNGT 2 cut(s) 142, 300
HpyCH4V TGCA 2 cut(s) 33, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 95
HpyF3I CTNAG 4 cut(s) 22, 55, 204, 254
Hsp92II CATG 1 cut(s) 73
LpnPI CCDG 9 cut(s) 9, 50, 52, 56, 91, 136, 145, 146, 253
Lsp1109I GCAGC 2 cut(s) 98, 101
LweI GCATC 3 cut(s) 83, 223, 245
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 162
MboII GAAGA 2 cut(s) 236, 294
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 2 cut(s) 109, 178
Mph1103I ATGCAT 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 39, 95
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 162
NsiI ATGCAT 1 cut(s) 238
PkrI GCNGC 2 cut(s) 88, 91
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 150
SatI GCNGC 2 cut(s) 87, 90
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 265
SetI ASST 5 cut(s) 23, 69, 152, 189, 214
SfaNI GCATC 3 cut(s) 83, 223, 245
SinI GGWCC 1 cut(s) 269
Sse9I AATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 142, 300
TaqI TCGA 1 cut(s) 218
TasI AATT 1 cut(s) 309
TscAI CASTG 2 cut(s) 250, 303
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 86, 89
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 2 cut(s) 250, 303
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 309
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.