Rroxscaffold_1G00058700

Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000708
Physical Location & Seq
Forward (+)
80683460 .. 80696129
12670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058700.1

Sequence Viewer

Length: 834 bp
ATGGCACTTATAGGTGCAGATTTTTGTGTGCATAGGTCTTTTTTGTTTGCTGGAACTTGGTCTTCGTACTCTAGCGTCTCCAACCCGACCCCCCCCCCCGACCTCGGCTCCTTCTCCAACCGAGCTTGTTCTCCGGAGTTCAGCTCTTTCTCTCTCGCTCTTCCCCGAAACCCTAGCTCTTTCCTCCTTCCTCTCCTGCTCTCTTTCCACAGCTCTTGTCTCTCCCTCGTTAACAGCCTTCGTCCCCTAACCGGCGCCATCGCCTCTACCGGTGCTTCTCGTCCAACGGTACCACGTCCTTGCTTCGAGATCCGAACCCCAACCGGTCCAATCATCCTCCATGGAGTCTCTCCTTCTCGATTGGTGCGACTTCTAGCGCCAAACGTCGGCGACGGAGGAACCGAACACAATCGGCATCGGGTACTGCGGGTTTGCAGATTCAAGACCAAATCAAAGTATTGCTTGACCAACAAGAGAGGTTGTATGAAAGACAATCTGAACTACAAGCTCTACCGGAAGCTTCCAAAGTTCTGGACCCCCTTAATGGGGCTTCAACAGCCACGAAGGCTGGAGGCCAAGAATGCTAAGTTTGTACATGGACAAGAAAATCTGCATCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACGGATGTGCGAGTCTACAAGCAGCTCAAGATTATGCACCCCCGGCCTGAAGTCCCACTTTGCCGATCAGGTCATGGCATCCACAGGAGCAGCAGCAGTAGCAGCATTAGCCTCATCGCCAAAGCCAAATAACACCATTGATTTGGAAAATGAAAAATGGAATAACCCTTCACCAAGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 ko05166 ko05167 map04218 map05166 map05167
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

277

Amino Acids

30.37

Weight (kDa)

10.09

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 2 cut(s) 254, 289
AccI GTMKAC 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 719
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 4 cut(s) 68, 291, 423, 594
AfiI CCNNNNNNNGG 7 cut(s) 104, 251, 386, 544, 545, 546, 651
AgeI ACCGGT 2 cut(s) 269, 323
AgsI TTSAA 2 cut(s) 442, 554
AjiI CACGTC 1 cut(s) 296
AleI CACNNNNGTG 1 cut(s) 655
AluBI AGCT 7 cut(s) 125, 144, 177, 213, 508, 520, 675
AluI AGCT 7 cut(s) 125, 144, 177, 213, 508, 520, 675
Alw26I GTCTC 3 cut(s) 82, 224, 352
AlwI GGATC 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 2 cut(s) 573, 694
ApeKI GCWGC 4 cut(s) 672, 740, 743, 752
AsiGI ACCGGT 2 cut(s) 269, 323
Asp718I GGTACC 1 cut(s) 289
AspLEI GCGC 2 cut(s) 257, 379
AspS9I GGNCC 2 cut(s) 326, 534
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 813
AvaII GGWCC 2 cut(s) 326, 534
BanI GGYRCC 2 cut(s) 254, 289
BbsI GAAGAC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 684, 752, 755, 764
BccI CCATC 1 cut(s) 266
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 3 cut(s) 82, 224, 352
BfaI CTAG 3 cut(s) 72, 174, 374
BfoI RGCGCY 2 cut(s) 258, 380
BglI GCCNNNNNGGC 1 cut(s) 565
BisI GCNGC 4 cut(s) 673, 741, 744, 753
BlsI GCNGC 4 cut(s) 674, 742, 745, 754
Bme1390I CCNGG 1 cut(s) 693
Bme18I GGWCC 2 cut(s) 326, 534
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 326, 534
BmiI GGNNCC 5 cut(s) 109, 256, 291, 400, 536
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 424, 622, 737
BpiI GAAGAC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 4 cut(s) 103, 340, 645, 691
BsaWI WCCGGW 4 cut(s) 133, 269, 323, 513
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 7 cut(s) 104, 251, 386, 544, 545, 546, 651
Bse118I RCCGGY 3 cut(s) 251, 269, 323
BseAI TCCGGA 1 cut(s) 133
BseDI CCNNGG 4 cut(s) 103, 340, 645, 691
BseGI GGATG 4 cut(s) 333, 613, 660, 728
BseLI CCNNNNNNNGG 7 cut(s) 104, 251, 386, 544, 545, 546, 651
BseXI GCAGC 4 cut(s) 684, 752, 755, 764
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 575, 696
BshNI GGYRCC 2 cut(s) 254, 289
BshTI ACCGGT 2 cut(s) 269, 323
BsiSI CCGG 6 cut(s) 134, 252, 270, 324, 514, 693
BslFI GGGAC 2 cut(s) 228, 688
BslI CCNNNNNNNGG 7 cut(s) 104, 251, 386, 544, 545, 546, 651
BsmAI GTCTC 3 cut(s) 82, 224, 352
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 228, 688
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 2 cut(s) 575, 696
Bsp13I TCCGGA 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 2 cut(s) 309, 715
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 427
BspANI GGCC 2 cut(s) 575, 696
BspEI TCCGGA 1 cut(s) 133
BspLI GGNNCC 5 cut(s) 109, 256, 291, 400, 536
BspPI GGATC 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 2 cut(s) 254, 289
BsrFI RCCGGY 3 cut(s) 251, 269, 323
BsrGI TGTACA 1 cut(s) 592
BssAI RCCGGY 3 cut(s) 251, 269, 323
BssECI CCNNGG 4 cut(s) 103, 340, 645, 691
BssMI GATC 2 cut(s) 309, 715
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 592
BstDEI CTNAG 1 cut(s) 585
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 4 cut(s) 333, 613, 660, 728
BstH2I RGCGCY 2 cut(s) 258, 380
BstHHI GCGC 2 cut(s) 257, 379
BstKTI GATC 2 cut(s) 312, 718
BstMAI GTCTC 3 cut(s) 82, 224, 352
BstMBI GATC 2 cut(s) 309, 715
BstMWI GCNNNNNNNGC 7 cut(s) 556, 565, 581, 693, 749, 752, 758
BstSCI CCNGG 1 cut(s) 691
BstV1I GCAGC 4 cut(s) 684, 752, 755, 764
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 309
BstXI CCANNNNNNTGG 2 cut(s) 531, 793
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 2 cut(s) 575, 696
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 2 cut(s) 244, 750
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 4 cut(s) 333, 613, 660, 728
CfoI GCGC 2 cut(s) 257, 379
Cfr10I RCCGGY 3 cut(s) 251, 269, 323
Cfr13I GGNCC 2 cut(s) 326, 534
CseI GACGC 1 cut(s) 64
Csp6I GTAC 4 cut(s) 67, 290, 422, 593
CspAI ACCGGT 2 cut(s) 269, 323
CspCI CAANNNNNGTGG 2 cut(s) 197, 232
CviAII CATG 3 cut(s) 341, 596, 724
CviQI GTAC 4 cut(s) 67, 290, 422, 593
DdeI CTNAG 1 cut(s) 585
DinI GGCGCC 1 cut(s) 256
DpnI GATC 2 cut(s) 311, 717
DpnII GATC 2 cut(s) 309, 715
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 326, 534
Eco57I CTGAAG 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 340
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 344, 599, 727
FaiI YATR 7 cut(s) 11, 33, 342, 485, 597, 685, 725
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 692, 724
FaqI GGGAC 2 cut(s) 228, 688
FatI CATG 3 cut(s) 340, 595, 723
FauI CCCGC 1 cut(s) 420
FblI GTMKAC 1 cut(s) 665
Fnu4HI GCNGC 4 cut(s) 673, 741, 744, 753
FokI GGATG 4 cut(s) 320, 600, 667, 715
Fsp4HI GCNGC 4 cut(s) 673, 741, 744, 753
FspBI CTAG 3 cut(s) 72, 174, 374
GlaI GCGC 2 cut(s) 256, 378
GluI GCNGC 4 cut(s) 673, 741, 744, 753
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 2 cut(s) 258, 380
HaeIII GGCC 2 cut(s) 575, 696
HapII CCGG 6 cut(s) 134, 252, 270, 324, 514, 693
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 257, 379
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 344, 599, 727
Hin6I GCGC 2 cut(s) 255, 377
HinP1I GCGC 2 cut(s) 255, 377
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 3 cut(s) 345, 438, 662
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 6 cut(s) 134, 252, 270, 324, 514, 693
HphI GGTGA 1 cut(s) 813
Hpy166II GTNNAC 2 cut(s) 232, 666
Hpy188I TCNGA 3 cut(s) 314, 498, 646
Hpy188III TCNNGA 6 cut(s) 134, 307, 357, 442, 532, 678
Hpy8I GTNNAC 2 cut(s) 232, 666
Hpy99I CGWCG 2 cut(s) 389, 395
HpyAV CCTTC 6 cut(s) 121, 197, 248, 363, 558, 828
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 295, 384
HpyCH4V TGCA 5 cut(s) 17, 31, 435, 613, 687
HpyF10VI GCNNNNNNNGC 7 cut(s) 556, 565, 581, 693, 749, 752, 758
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 2 cut(s) 295, 384
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 344, 599, 727
HspAI GCGC 2 cut(s) 255, 377
KasI GGCGCC 1 cut(s) 254
Kpn2I TCCGGA 1 cut(s) 133
KpnI GGTACC 1 cut(s) 293
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 309, 715
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 113, 737
Lsp1109I GCAGC 4 cut(s) 684, 752, 755, 764
LweI GCATC 3 cut(s) 424, 622, 737
MaeI CTAG 3 cut(s) 72, 174, 374
MaeII ACGT 2 cut(s) 295, 384
MalI GATC 2 cut(s) 311, 717
MboI GATC 2 cut(s) 309, 715
MboII GAAGA 2 cut(s) 54, 152
MflI RGATCY 1 cut(s) 309
Mly113I GGCGCC 1 cut(s) 255
MlyI GAGTC 2 cut(s) 354, 671
MmeI TCCRAC 4 cut(s) 105, 141, 308, 641
MroI TCCGGA 1 cut(s) 133
MseI TTAA 2 cut(s) 231, 542
MslI CAYNNNNRTG 1 cut(s) 655
MspI CCGG 6 cut(s) 134, 252, 270, 324, 514, 693
MspR9I CCNGG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 586
MwoI GCNNNNNNNGC 7 cut(s) 556, 565, 581, 693, 749, 752, 758
NarI GGCGCC 1 cut(s) 255
NciI CCSGG 1 cut(s) 693
NcoI CCATGG 1 cut(s) 340
NdeII GATC 2 cut(s) 309, 715
NlaIII CATG 3 cut(s) 344, 599, 727
NlaIV GGNNCC 5 cut(s) 109, 256, 291, 400, 536
NmeAIII GCCGAG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 364, 399
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 438
PinAI ACCGGT 2 cut(s) 269, 323
PkrI GCNGC 4 cut(s) 674, 742, 745, 754
PleI GAGTC 2 cut(s) 353, 670
PluTI GGCGCC 1 cut(s) 258
PpsI GAGTC 2 cut(s) 353, 670
PspN4I GGNNCC 5 cut(s) 109, 256, 291, 400, 536
PspPI GGNCC 2 cut(s) 326, 534
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 4 cut(s) 68, 291, 423, 594
RsaNI GTAC 4 cut(s) 67, 290, 422, 593
RseI CAYNNNNRTG 1 cut(s) 655
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 231, 542
SatI GCNGC 4 cut(s) 673, 741, 744, 753
Sau3AI GATC 2 cut(s) 309, 715
Sau96I GGNCC 2 cut(s) 326, 534
SchI GAGTC 2 cut(s) 354, 671
ScrFI CCNGG 1 cut(s) 693
SfaNI GCATC 3 cut(s) 424, 622, 737
SfoI GGCGCC 1 cut(s) 256
SinI GGWCC 2 cut(s) 326, 534
SmiMI CAYNNNNRTG 1 cut(s) 655
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
SsiI CCGC 1 cut(s) 427
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 3 cut(s) 72, 174, 374
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 298, 387
TaqI TCGA 2 cut(s) 306, 358
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 2 cut(s) 231, 542
Tru9I TTAA 2 cut(s) 231, 542
TseI GCWGC 4 cut(s) 672, 740, 743, 752
TspDTI ATGAA 2 cut(s) 500, 816
TspGWI ACGGA 2 cut(s) 408, 667
VpaK11BI GGWCC 2 cut(s) 326, 534
XmiI GTMKAC 1 cut(s) 665
XspI CTAG 3 cut(s) 72, 174, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.