Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000708

Physical Location & Seq

Genomic Coordinates Forward (+)

57023966 .. 57026328

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAACAGCACTTGCGAGGTTCTCAGTCGCCGATCGACGTCTTCAAGTACCGCCGTCGTCAACTGTCGCCGCTTGCGCCCCTGCAGAATCTGATCGCGCCGCAGCCGGGTGACGGCGTTTCGGTTGCCGGAAGCTACGGCTCCAAGGGCCAGCTTGTGCATGGTAAAGAAAATCTGCGTCCAACTTCTTTCCCTGCCAAGAACAAATCCGAGGCACAGATGTGCAAGTCTACAACTAGCTCAGGCTTATGCACACCCAGCCCAAAGTCCCACGTCGCCCATCAGGTCATGTCGTCAGCTGTTACAGAAGCAGCAGCAGCAGCGTTAACCTCATCGCCAAAGCCAAATAACACCAGCGAGACCCCAATTACTGTCATCAGCTGCAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGCCTCCAACTGAATTACCTTCATCGAACGAAGATGTGGATGCATCCAGCACTGCTGGGCTGAGTCTTGTCTATGGTCCTACTACAACAAGGAGATTGCCACTGTTTACTGAAATTTGCCCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04218 ko05166 ko05167 map04218 map05166 map05167

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

183

Amino Acids

19.41

Weight (kDa)

6.42

Isoelectric Point (pI)

73.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g30620 FvH4_5g35251 FvH4_6g27415
malus_domestica	MD08G1222100.v1.1
prunus_persica	Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.1G559900_v2.0.a1 Prupe.4G263300_v2.0.a1
pyrus_communis	pycom08g19290
rosa_chinensis	RchiOBHm_Chr0c11g0499381 RchiOBHm_Chr4g0424621 RchiOBHm_Chr5g0049711 RchiOBHm_Chr7g0225501 RchiOBHm_Chr7g0231151 RchiOBHm_Chr7g0236151 RchiOBHm_Chr7g0236421 RchiOBHm_Chr7g0236451 RchiOBHm_Chr7g0236491
rosa_laevigata	RLG00000001079 RLG00000001101 RLG00000001811 RLG00000001938 RLG00000008437 RLG00000030018
rosa_multiflora	Rmu_sc0002449.1_g000030 Rmu_sc0002905.1_g000002 Rmu_sc0003720.1_g000007 Rmu_sc0006512.1_g000003 Rmu_sc0010060.1_g000005 Rmu_sc0010974.1_g000002 Rmu_ssc0000372.1_g000049
rosa_roxburghii	Rroxscaffold_1G00058700 Rroxscaffold_3G00225090 Rroxscaffold_3G00225340 Rroxscaffold_3G00229870 Rroxscaffold_3G00233750
rosa_rugosa	Rorug01G0432400 Rorug03G0196000 Rorug03G0282100 Rorug04G0090400 Rorug07G0163400 Rorug07G0230100.1 Rorug07G0294500 Rorug07G0294600 Rorug07G0294600 Rorug07G0297000
rosa_samantha	Rh5DG349900 Rh7AG373300 Rh7AG413100 Rh7AG434600 Rh7AG448300 Rh7AG448800 Rh7AG449600 Rh7AG451300 Rh7AG452600 Rh7BG294100 Rh7BG364800 Rh7BG421500 Rh7BG423100 Rh7BG423600 Rh7DG368100 Rh7DG375700 Rh7DG408900 Rh7DG439000 Rh7DG440700
rosa_wichuraiana	Rw1G008160 Rw7G031710 Rw7G034080 Rw7G037360 Rw7G037520 Rw7G037590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	52, 71, 101
AcsI	RAATTY	1 cut(s)	537
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	107, 113
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	135, 154, 240, 299, 381
AluI	AGCT	5 cut(s)	135, 154, 240, 299, 381
Alw26I	GTCTC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	6 cut(s)	103, 311, 314, 317, 320, 381
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	79, 100
AspS9I	GGNCC	2 cut(s)	148, 500
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	122, 387
AvaII	GGWCC	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	6 cut(s)	115, 323, 326, 329, 332, 368
BccI	CCATC	2 cut(s)	288, 401
BceAI	ACGGC	3 cut(s)	39, 130, 154
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	8 cut(s)	71, 101, 104, 312, 315, 318, 321, 382
BlsI	GCNGC	8 cut(s)	72, 102, 105, 313, 316, 319, 322, 383
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	500
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	148, 500
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	454, 476
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	144, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 113
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	144, 210
BseGI	GGATG	2 cut(s)	467, 469
BseLI	CCNNNNNNNGG	2 cut(s)	107, 113
BseMII	CTCAG	3 cut(s)	38, 255, 476
BseNI	ACTGG	1 cut(s)	395
BseXI	GCAGC	6 cut(s)	115, 323, 326, 329, 332, 368
BseYI	CCCAGC	2 cut(s)	257, 479
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	107, 129
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	107, 113
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	33, 93
BspACI	CCGC	3 cut(s)	52, 71, 101
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	37, 254, 477
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	144, 210
BssMI	GATC	2 cut(s)	33, 93
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	66, 373, 528
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	75, 152
BstDEI	CTNAG	3 cut(s)	24, 241, 485
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	467, 469
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	79, 100
BstKTI	GATC	2 cut(s)	36, 96
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	2 cut(s)	33, 93
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	83
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	6 cut(s)	115, 323, 326, 329, 332, 368
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	467, 469
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	474, 524
Cac8I	GCNNGC	2 cut(s)	75, 152
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	79, 100
Cfr13I	GGNCC	2 cut(s)	148, 500
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	161, 289
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	24, 241, 485
DpnI	GATC	2 cut(s)	35, 95
DpnII	GATC	2 cut(s)	33, 93
Eco130I	CCWWGG	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	164, 292
FaiI	YATR	4 cut(s)	162, 250, 290, 498
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	160, 288
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	8 cut(s)	71, 101, 104, 312, 315, 318, 321, 382
FokI	GGATG	2 cut(s)	454, 476
Fsp4HI	GCNGC	8 cut(s)	71, 101, 104, 312, 315, 318, 321, 382
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	78, 99
GluI	GCNGC	8 cut(s)	71, 101, 104, 312, 315, 318, 321, 382
GsaI	CCCAGC	2 cut(s)	261, 483
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	107, 129
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	79, 100
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	164, 292
Hin6I	GCGC	2 cut(s)	77, 98
HinP1I	GCGC	2 cut(s)	77, 98
HincII	GTYRAC	2 cut(s)	62, 327
HindII	GTYRAC	2 cut(s)	62, 327
HinfI	GANTC	2 cut(s)	88, 487
HpaI	GTTAAC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	107, 129
HphI	GGTGA	2 cut(s)	122, 387
Hpy166II	GTNNAC	4 cut(s)	62, 231, 327, 531
Hpy188I	TCNGA	2 cut(s)	93, 211
Hpy8I	GTNNAC	4 cut(s)	62, 231, 327, 531
Hpy99I	CGWCG	3 cut(s)	41, 60, 278
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	3 cut(s)	66, 373, 528
HpyCH4IV	ACGT	2 cut(s)	39, 273
HpyCH4V	TGCA	6 cut(s)	85, 160, 225, 252, 384, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
HpyF3I	CTNAG	3 cut(s)	24, 241, 485
HpySE526I	ACGT	2 cut(s)	39, 273
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	164, 292
HspAI	GCGC	2 cut(s)	77, 98
KspAI	GTTAAC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	33, 93
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	6 cut(s)	115, 323, 326, 329, 332, 368
LweI	GCATC	2 cut(s)	454, 476
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	2 cut(s)	39, 273
MaeIII	GTNAC	3 cut(s)	110, 301, 393
MalI	GATC	2 cut(s)	35, 95
MboI	GATC	2 cut(s)	33, 93
MboII	GAAGA	2 cut(s)	34, 467
MluCI	AATT	3 cut(s)	366, 437, 537
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	2 cut(s)	206, 455
MnlI	CCTC	5 cut(s)	11, 205, 340, 409, 438
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	2 cut(s)	299, 381
MspI	CCGG	2 cut(s)	107, 129
MspR9I	CCNGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	76, 147, 258, 317, 320
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	33, 93
NlaIII	CATG	2 cut(s)	164, 292
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	110, 393
NsiI	ATGCAT	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	8 cut(s)	72, 102, 105, 313, 316, 319, 322, 383
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PspEI	GGTNACC	1 cut(s)	393
PspFI	CCCAGC	2 cut(s)	257, 479
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	148, 500
PstI	CTGCAG	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	2 cut(s)	299, 381
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	8 cut(s)	71, 101, 104, 312, 315, 318, 321, 382
Sau3AI	GATC	2 cut(s)	33, 93
Sau96I	GGNCC	2 cut(s)	148, 500
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	108
SfaNI	GCATC	2 cut(s)	454, 476
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	366, 437, 537
SsiI	CCGC	3 cut(s)	52, 71, 101
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	66, 373, 528
TaiI	ACGT	2 cut(s)	42, 276
TaqI	TCGA	2 cut(s)	36, 449
TasI	AATT	3 cut(s)	366, 437, 537
TauI	GCSGC	2 cut(s)	73, 103
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	481, 531
TseFI	GTSAC	2 cut(s)	110, 393
TseI	GCWGC	6 cut(s)	103, 311, 314, 317, 320, 381
Tsp45I	GTSAC	2 cut(s)	110, 393
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	2 cut(s)	481, 531
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.