Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Reverse (-)

76470575 .. 76470967

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTTGGGTCGGGAGCAACAGATCCAACAAACGGGAGCAAGGGTGGGTTCAGATCCGGGCGCGGCTATGGATTTGTCTCGTGGTTGGAGGGGGGAATGGAGATCAGGGCTCTGATCGGGTTATGTCGAGTTGTCTCAGGGGGTTCCCCTCGAGTTTGGTGCGGTGGAGCCGCGGATCTGAAGGTGGCGGTCTCGATGAAGTCTATGGTCCGGGCTAGTGTGGTGGCCTCGATCTGTTGCTCGTTGCAAGGTGGCGGAGGTTTTGTCGGAATGATAGCTGTTCGGATGGAAGCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

9.93

Weight (kDa)

9.49

Isoelectric Point (pI)

20.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 173
AciI	CCGC	6 cut(s)	63, 162, 171, 173, 188, 255
AclWI	GGATC	3 cut(s)	17, 48, 183
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	3 cut(s)	82, 139, 196
AlwI	GGATC	3 cut(s)	17, 48, 183
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	2 cut(s)	58, 212
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	79
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BcnI	CCSGG	2 cut(s)	58, 212
BcoDI	GTCTC	3 cut(s)	82, 139, 196
BfaI	CTAG	2 cut(s)	216, 298
BisI	GCNGC	2 cut(s)	64, 171
BlsI	GCNGC	2 cut(s)	65, 172
Bme1390I	CCNGG	2 cut(s)	58, 212
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	145, 169
BmrFI	CCNGG	2 cut(s)	58, 212
BpuMI	CCSGG	2 cut(s)	58, 212
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	63, 173
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	57, 211
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	3 cut(s)	82, 139, 196
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
BspACI	CCGC	6 cut(s)	63, 162, 171, 173, 188, 255
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	63, 173
BspLI	GGNNCC	2 cut(s)	145, 169
BspPI	GGATC	3 cut(s)	17, 48, 183
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	2 cut(s)	63, 173
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	6 cut(s)	25, 56, 105, 117, 178, 234
BstMAI	GTCTC	3 cut(s)	82, 139, 196
BstMBI	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
BstSCI	CCNGG	2 cut(s)	56, 210
BstUI	CGCG	2 cut(s)	63, 173
BstX2I	RGATCY	3 cut(s)	22, 53, 175
BstYI	RGATCY	3 cut(s)	22, 53, 175
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	208
Cfr42I	CCGCGG	1 cut(s)	174
CviJI	RGCY	7 cut(s)	66, 110, 170, 215, 227, 278, 297
CviKI_1	RGCY	7 cut(s)	66, 110, 170, 215, 227, 278, 297
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	6 cut(s)	24, 55, 104, 116, 177, 233
DpnII	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
EciI	GGCGGA	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	112
FaiI	YATR	3 cut(s)	69, 124, 206
Fnu4HI	GCNGC	2 cut(s)	64, 171
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	64, 171
FspBI	CTAG	2 cut(s)	216, 298
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	64, 171
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	57, 211
HhaI	GCGC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	57, 211
Hpy188I	TCNGA	5 cut(s)	53, 114, 180, 269, 285
Hpy188III	TCNNGA	2 cut(s)	12, 193
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
LmnI	GCTCC	3 cut(s)	14, 36, 167
LpnPI	CCDG	5 cut(s)	70, 91, 123, 224, 279
MaeI	CTAG	2 cut(s)	216, 298
MalI	GATC	6 cut(s)	24, 55, 104, 116, 177, 233
MboI	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
MflI	RGATCY	3 cut(s)	22, 53, 175
MhlI	GDGCHC	1 cut(s)	112
MmeI	TCCRAC	3 cut(s)	50, 66, 247
MnlI	CCTC	4 cut(s)	82, 159, 238, 251
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	57, 211
MspR9I	CCNGG	2 cut(s)	58, 212
MvnI	CGCG	2 cut(s)	63, 173
NciI	CCSGG	2 cut(s)	58, 212
NdeII	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
NlaIV	GGNNCC	2 cut(s)	145, 169
PaeR7I	CTCGAG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	65, 172
PspN4I	GGNNCC	2 cut(s)	145, 169
PspPI	GGNCC	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	150
PsuI	RGATCY	3 cut(s)	22, 53, 175
SacII	CCGCGG	1 cut(s)	174
SatI	GCNGC	2 cut(s)	64, 171
Sau3AI	GATC	6 cut(s)	22, 53, 102, 114, 175, 231
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	58, 212
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	4 cut(s)	186, 253, 262, 280
Sfr274I	CTCGAG	1 cut(s)	150
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SsiI	CCGC	6 cut(s)	63, 162, 171, 173, 188, 255
SspMI	CTAG	2 cut(s)	216, 298
StyD4I	CCNGG	2 cut(s)	56, 210
TaqI	TCGA	4 cut(s)	127, 151, 194, 230
TauI	GCSGC	2 cut(s)	66, 173
TspDTI	ATGAA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	150
XspI	CTAG	2 cut(s)	216, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.