Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Forward (+)

18302274 .. 18303660

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCAACCTACTTGTAGTTCTAGTACTAATGCTCTTACTTCCATCATGGACCTTCCTGATGATTGTCTCGTTTTTATTTTCCAATGCCTTGATTCTAGCTCTGACCGCGAATCCTTTGGCTTGACTTGCCATCGCTGTCTTCGTATTCAAAATCTTAAACGTCGGTCCTTACATTTTCAATGTTCATTCAGAGAGCTTGACATTTCCTCATTATCACATTCGAATAACCATGTTAACATCAGCACCTATCATCTCCATAGGCTGCTTACTCGCTTTCAGCATTTACACTCATTGTCCTTATCTGGCTGCACAGAGCTACCTGATTCAAGCTTGGACCATTTGGTAAATTATGGGTCAAAGTTGCACACCCTTATTCTGGAATGTTGTTTTCGTATTACTAATCATGGGTTGTCTGTGGTAGCTACTGGTTGTCCATCATTACAAGTGATCAGCCTTTACCGTTGCCAAATTTCTGATTTTGGGTTAGAAAGTTTGGCTAATTCTTGCTCAATTTTAAAGGATGTGAATCTCTCTTACTGCTATTTTATTACTGATCATGGCTTAAGAGCTCTTTCACAAGGCTGTCGTCAACTTCAGGCAGTTAAGATATCACATTGTAAGGGCGTAACTGGTATTGGTTTTAAAGGTTGTTCATCAACTTTAGCTTATGTAGAAGCTGAATCATGTAAGCTTGAGCCAGAGGGCATTTCGGGAATTGTAAGTGGAGGTGGGATTGAATATTTAAATATGTCCGGTTTAATATTGTTCAATGGTGGAAATGGTTTGGCAACAATTGGGAGGGGATTTGCCTTCAGCCTTAAAATTCTTAACCTTCGGCTGTGCAGAACTGTTGGTGATGAGTCTATTGTAGCAATTGCAGAAGGTTGTCCACTACTTGAGGAATGGAACTTGGCATTGTGTCATGGGGTCAGAATAGTTGGTTGGTCTTCTATTGGGATGAATTGTCACAAATTGGAGAAACTCCATGTGAACCGGTGTCGGAGTCTATGTGATGGTGGGTTACTGGCTTTGCAAAATGGTTGCAAACAGCTCTCTGTTCTGTACATGAACGGTTGTTCTAGGATTACTTCAACAGCAATAGAGTTGTTCAAACGTTATAGGAGTGATGTTACCATCAAGGAAGAAGAAAAAATGTGTATAGGGGCCTATGTGGGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

394

Amino Acids

43.17

Weight (kDa)

7.73

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	106
AclI	AACGTT	1 cut(s)	1114
AcsI	RAATTY	2 cut(s)	468, 822
AcuI	CTGAAG	2 cut(s)	578, 796
AfaI	GTAC	2 cut(s)	25, 1064
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflII	CTTAAG	1 cut(s)	562
AgeI	ACCGGT	1 cut(s)	993
AgsI	TTSAA	7 cut(s)	149, 179, 327, 737, 769, 1092, 1111
AjuI	GAANNNNNNNTTGG	2 cut(s)	925, 957
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	1164
ApeKI	GCWGC	2 cut(s)	262, 306
ApoI	RAATTY	2 cut(s)	468, 822
AsiGI	ACCGGT	1 cut(s)	993
AspS9I	GGNCC	4 cut(s)	49, 165, 334, 1164
AsuHPI	GGTGA	1 cut(s)	866
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	3 cut(s)	49, 165, 334
BanII	GRGCYC	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	131, 939
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	249, 293
BccI	CCATC	5 cut(s)	50, 138, 442, 1007, 1142
BclI	TGATCA	2 cut(s)	447, 553
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	3 cut(s)	21, 96, 1080
BfrI	CTTAAG	1 cut(s)	562
BisI	GCNGC	2 cut(s)	263, 307
BlsI	GCNGC	2 cut(s)	264, 308
BmcAI	AGTACT	1 cut(s)	25
Bme18I	GGWCC	3 cut(s)	49, 165, 334
BmgT120I	GGNCC	4 cut(s)	49, 165, 334, 1164
BmiI	GGNNCC	1 cut(s)	1165
BpiI	GAAGAC	2 cut(s)	131, 939
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	713, 917
BsaBI	GATNNNNATC	1 cut(s)	525
BsaWI	WCCGGW	2 cut(s)	752, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	1 cut(s)	993
Bse1I	ACTGG	3 cut(s)	430, 634, 1029
Bse8I	GATNNNNATC	1 cut(s)	525
BseGI	GGATG	2 cut(s)	526, 963
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseNI	ACTGG	3 cut(s)	430, 634, 1029
BseXI	GCAGC	2 cut(s)	249, 293
BsgI	GTGCAG	2 cut(s)	292, 862
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	1166
BshTI	ACCGGT	1 cut(s)	993
BsiHKAI	GWGCWC	1 cut(s)	571
BsiSI	CCGG	2 cut(s)	753, 994
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	1166
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	2 cut(s)	447, 553
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	1166
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	1165
BspT104I	TTCGAA	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	993
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	3 cut(s)	430, 634, 1029
BssAI	RCCGGY	1 cut(s)	993
BssMI	GATC	2 cut(s)	447, 553
Bst4CI	ACNGT	3 cut(s)	461, 850, 1073
BstAFI	CTTAAG	1 cut(s)	562
BstAUI	TGTACA	1 cut(s)	1062
BstBI	TTCGAA	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	526, 963
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	450, 556
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	447, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 126
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	249, 293
BstV2I	GAAGAC	2 cut(s)	131, 939
BsuRI	GGCC	1 cut(s)	1166
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	526, 963
Cfr10I	RCCGGY	1 cut(s)	993
Cfr13I	GGNCC	4 cut(s)	49, 165, 334, 1164
Csp6I	GTAC	2 cut(s)	24, 1063
CspAI	ACCGGT	1 cut(s)	993
CviAII	CATG	8 cut(s)	46, 230, 404, 557, 684, 923, 986, 1066
CviQI	GTAC	2 cut(s)	24, 1063
DpnI	GATC	2 cut(s)	449, 555
DpnII	GATC	2 cut(s)	447, 553
DraI	TTTAAA	3 cut(s)	516, 643, 744
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	49, 165, 334
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	578, 796
EcoICRI	GAGCTC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	1164
EcoRV	GATATC	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	571
FaeI	CATG	8 cut(s)	49, 233, 407, 560, 687, 926, 989, 1069
FatI	CATG	8 cut(s)	45, 229, 403, 556, 683, 922, 985, 1065
FbaI	TGATCA	2 cut(s)	447, 553
Fnu4HI	GCNGC	2 cut(s)	263, 307
FokI	GGATG	2 cut(s)	533, 970
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	263, 307
FspBI	CTAG	3 cut(s)	21, 96, 1080
GluI	GCNGC	2 cut(s)	263, 307
HaeIII	GGCC	1 cut(s)	1166
HapII	CCGG	2 cut(s)	753, 994
Hin1II	CATG	8 cut(s)	49, 233, 407, 560, 687, 926, 989, 1069
HincII	GTYRAC	2 cut(s)	235, 590
HindII	GTYRAC	2 cut(s)	235, 590
HindIII	AAGCTT	2 cut(s)	328, 689
HinfI	GANTC	7 cut(s)	92, 110, 323, 526, 680, 860, 1003
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	753, 994
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	4 cut(s)	235, 590, 890, 991
Hpy188I	TCNGA	5 cut(s)	103, 191, 475, 932, 1002
Hpy188III	TCNNGA	3 cut(s)	56, 377, 711
Hpy8I	GTNNAC	4 cut(s)	235, 590, 890, 991
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	62, 820, 842, 875
HpyCH4III	ACNGT	3 cut(s)	461, 850, 1073
HpyCH4IV	ACGT	2 cut(s)	160, 1114
HpyCH4V	TGCA	7 cut(s)	4, 309, 364, 843, 878, 1033, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 126
HpySE526I	ACGT	2 cut(s)	160, 1114
Hsp92II	CATG	8 cut(s)	49, 233, 407, 560, 687, 926, 989, 1069
Ksp22I	TGATCA	2 cut(s)	447, 553
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	447, 553
Lsp1109I	GCAGC	2 cut(s)	249, 293
MaeI	CTAG	3 cut(s)	21, 96, 1080
MaeII	ACGT	2 cut(s)	160, 1114
MaeIII	GTNAC	4 cut(s)	625, 965, 1020, 1129
MalI	GATC	2 cut(s)	449, 555
MboI	GATC	2 cut(s)	447, 553
MboII	GAAGA	4 cut(s)	131, 939, 1154, 1157
MfeI	CAATTG	2 cut(s)	792, 873
MhlI	GDGCHC	1 cut(s)	571
MlyI	GAGTC	2 cut(s)	869, 1012
MmeI	TCCRAC	1 cut(s)	980
MnlI	CCTC	5 cut(s)	217, 694, 719, 792, 892
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	2 cut(s)	753, 994
MunI	CAATTG	2 cut(s)	792, 873
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	105, 126
NdeII	GATC	2 cut(s)	447, 553
NlaIII	CATG	8 cut(s)	49, 233, 407, 560, 687, 926, 989, 1069
NlaIV	GGNNCC	1 cut(s)	1165
NmuCI	GTSAC	1 cut(s)	965
NspV	TTCGAA	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	5 cut(s)	92, 110, 323, 526, 680
PinAI	ACCGGT	1 cut(s)	993
PkrI	GCNGC	2 cut(s)	264, 308
PleI	GAGTC	2 cut(s)	868, 1011
PpsI	GAGTC	2 cut(s)	868, 1011
Psp124BI	GAGCTC	1 cut(s)	571
Psp1406I	AACGTT	1 cut(s)	1114
PspN4I	GGNNCC	1 cut(s)	1165
PspPI	GGNCC	4 cut(s)	49, 165, 334, 1164
RsaI	GTAC	2 cut(s)	25, 1064
RsaNI	GTAC	2 cut(s)	24, 1063
SacI	GAGCTC	1 cut(s)	571
SatI	GCNGC	2 cut(s)	263, 307
Sau3AI	GATC	2 cut(s)	447, 553
Sau96I	GGNCC	4 cut(s)	49, 165, 334, 1164
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	2 cut(s)	869, 1012
SduI	GDGCHC	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	3 cut(s)	49, 165, 334
SmiI	ATTTAAAT	1 cut(s)	744
SmlI	CTYRAG	3 cut(s)	562, 692, 896
SmoI	CTYRAG	3 cut(s)	562, 692, 896
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	2 cut(s)	740, 762
SspMI	CTAG	3 cut(s)	21, 96, 1080
SstI	GAGCTC	1 cut(s)	571
SwaI	ATTTAAAT	1 cut(s)	744
TaaI	ACNGT	3 cut(s)	461, 850, 1073
TaiI	ACGT	2 cut(s)	163, 1117
TaqI	TCGA	1 cut(s)	221
TaqII	GACCGA	1 cut(s)	153
TatI	WGTACW	2 cut(s)	23, 1062
TfiI	GAWTC	5 cut(s)	92, 110, 323, 526, 680
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	262, 306
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	4 cut(s)	174, 642, 974, 1082
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	49, 165, 334
XapI	RAATTY	2 cut(s)	468, 822
XspI	CTAG	3 cut(s)	21, 96, 1080
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.