Rw6G022240

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005714
Physical Location & Seq
Forward (+)
43991277 .. 43992461
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022240.1

Sequence Viewer

Length: 1185 bp
ATGCAGCAAACTACTTGTAACTCTAGTACTAATGCTCTTACTTCCATTATGGACTTGCCTGATGATTGTCTCTTCTTTATTTTCCACCGCCTTGATTCTTCCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGCTGTCTTCGTATTCAAAATCTTAGCCGCCGGTCCTTGCAGTTTGAGTGTTCATTTAGGCAACTTGACAAACCCTCGTTATCACATTCCAACATTACCATTAACAGCTCCCATGTCCATAGGCTGCTTACTCGCTTTCAGCATTTGCGCTCATTGTCCCTATCTGGTTGCACACACTTACCTGATTCAAGCTTGAGCCATTTGACAAGCTATGGTTCAAAGTTGCACACACTTCACCTGGATTGCTGTTTTGGTATTACTGATCATGGGTTGTCTGTGGTAGCTACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGTCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCCAGAGGGCATTTCGGGAATCATCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCATAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACTGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTCTGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTCGAGGTAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

394

Amino Acids

43.22

Weight (kDa)

8.09

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 82 - 210 4e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 131 - 291 3.7e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 281 - 371 9.7e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 970
AccIII TCCGGA 1 cut(s) 831
AciI CCGC 3 cut(s) 88, 163, 875
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 3 cut(s) 28, 533, 1061
AfiI CCNNNNNNNGG 2 cut(s) 592, 970
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 9 cut(s) 152, 324, 354, 514, 641, 734, 742, 896, 1108
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 372
AleI CACNNNNGTG 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 831
AoxI GGCC 1 cut(s) 1160
ApeKI GCWGC 4 cut(s) 4, 259, 459, 1045
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 2 cut(s) 285, 694
AspS9I GGNCC 2 cut(s) 168, 1160
AsuHPI GGTGA 2 cut(s) 362, 1133
AvaII GGWCC 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 809
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 2 cut(s) 134, 936
BbvI GCAGC 4 cut(s) 16, 246, 446, 1057
BcgI CGANNNNNNTGC 2 cut(s) 1020, 1054
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 4 cut(s) 24, 423, 482, 1164
BfmI CTRYAG 1 cut(s) 1089
BfrI CTTAAG 1 cut(s) 815
BisI GCNGC 5 cut(s) 5, 163, 260, 460, 1046
BlsI GCNGC 5 cut(s) 6, 164, 261, 461, 1047
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 168, 1160
BmrFI CCNGG 1 cut(s) 374
BpiI GAAGAC 2 cut(s) 134, 936
BpuEI CTTGAG 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 831
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 970
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 631, 781
Bse21I CCTNAGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 831
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 523, 840
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 592, 970
BseMI GCAATG 1 cut(s) 1025
BseNI ACTGG 2 cut(s) 631, 781
BseXI GCAGC 4 cut(s) 16, 246, 446, 1057
BshFI GGCC 1 cut(s) 1162
BsiSI CCGG 2 cut(s) 166, 832
BslFI GGGAC 2 cut(s) 277, 967
BslI CCNNNNNNNGG 2 cut(s) 592, 970
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 277, 967
BsnI GGCC 1 cut(s) 1162
Bsp1286I GDGCHC 1 cut(s) 568
Bsp13I TCCGGA 1 cut(s) 831
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 2 cut(s) 397, 1009
BspACI CCGC 3 cut(s) 88, 163, 875
BspANI GGCC 1 cut(s) 1162
BspEI TCCGGA 1 cut(s) 831
BspHI TCATGA 1 cut(s) 919
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 2 cut(s) 631, 781
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 397, 1009
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
Bst6I CTCTTC 2 cut(s) 77, 790
BstAFI CTTAAG 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 1059
BstC8I GCNNGC 4 cut(s) 587, 686, 690, 1043
BstDEI CTNAG 3 cut(s) 158, 809, 907
BstF5I GGATG 2 cut(s) 523, 840
BstHHI GCGC 2 cut(s) 285, 694
BstKTI GATC 2 cut(s) 400, 1012
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 397, 1009
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 1089
BstV1I GCAGC 4 cut(s) 16, 246, 446, 1057
BstV2I GAAGAC 2 cut(s) 134, 936
Bsu36I CCTNAGG 1 cut(s) 809
BsuRI GGCC 1 cut(s) 1162
BtgZI GCGATG 2 cut(s) 119, 867
BtsCI GGATG 2 cut(s) 523, 840
BtsIMutI CAGTG 3 cut(s) 624, 724, 911
Cac8I GCNNGC 4 cut(s) 587, 686, 690, 1043
CciI TCATGA 1 cut(s) 919
CfoI GCGC 2 cut(s) 285, 694
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 168, 1160
Csp6I GTAC 3 cut(s) 27, 532, 1060
CviAII CATG 6 cut(s) 248, 401, 539, 920, 983, 1063
CviQI GTAC 3 cut(s) 27, 532, 1060
DdeI CTNAG 3 cut(s) 158, 809, 907
DpnI GATC 2 cut(s) 399, 1011
DpnII GATC 2 cut(s) 397, 1009
Eam1104I CTCTTC 2 cut(s) 77, 790
EarI CTCTTC 2 cut(s) 77, 790
Eco24I GRGCYC 1 cut(s) 568
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
FaqI GGGAC 2 cut(s) 277, 967
FatI CATG 6 cut(s) 247, 400, 538, 919, 982, 1062
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 5 cut(s) 5, 163, 260, 460, 1046
FokI GGATG 2 cut(s) 530, 847
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 5 cut(s) 5, 163, 260, 460, 1046
FspBI CTAG 4 cut(s) 24, 423, 482, 1164
GlaI GCGC 2 cut(s) 284, 693
GluI GCNGC 5 cut(s) 5, 163, 260, 460, 1046
HaeIII GGCC 1 cut(s) 1162
HapII CCGG 2 cut(s) 166, 832
HhaI GCGC 2 cut(s) 285, 694
Hin1II CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
Hin6I GCGC 2 cut(s) 283, 692
HinP1I GCGC 2 cut(s) 283, 692
HindIII AAGCTT 2 cut(s) 325, 686
HpaII CCGG 2 cut(s) 166, 832
HphI GGTGA 2 cut(s) 362, 1133
Hpy166II GTNNAC 1 cut(s) 887
Hpy188I TCNGA 2 cut(s) 106, 550
Hpy188III TCNNGA 4 cut(s) 708, 832, 920, 928
Hpy8I GTNNAC 1 cut(s) 887
HpyAV CCTTC 2 cut(s) 508, 872
HpyCH4III ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
HpyCH4V TGCA 6 cut(s) 4, 175, 306, 361, 684, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 3 cut(s) 158, 809, 907
Hsp92II CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
HspAI GCGC 2 cut(s) 283, 692
Kpn2I TCCGGA 1 cut(s) 831
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 397, 1009
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 16, 246, 446, 1057
MaeI CTAG 4 cut(s) 24, 423, 482, 1164
MaeIII GTNAC 4 cut(s) 17, 622, 1081, 1126
MalI GATC 2 cut(s) 399, 1011
MboI GATC 2 cut(s) 397, 1009
MboII GAAGA 7 cut(s) 64, 90, 134, 807, 908, 936, 1154
MfeI CAATTG 2 cut(s) 789, 870
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 5 cut(s) 465, 496, 610, 789, 870
MlyI GAGTC 2 cut(s) 545, 866
MmeI TCCRAC 2 cut(s) 249, 951
MroI TCCGGA 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 978
MseI TTAA 5 cut(s) 237, 560, 816, 825, 1077
MslI CAYNNNNRTG 2 cut(s) 577, 768
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 166, 832
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 2 cut(s) 789, 870
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 456
NdeII GATC 2 cut(s) 397, 1009
NlaIII CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
NmuCI GTSAC 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 577
PagI TCATGA 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 9 cut(s) 95, 113, 320, 473, 523, 677, 711, 820, 988
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 5 cut(s) 6, 164, 261, 461, 1047
PleI GAGTC 2 cut(s) 545, 865
PpsI GAGTC 2 cut(s) 545, 865
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspPI GGNCC 2 cut(s) 168, 1160
RsaI GTAC 3 cut(s) 28, 533, 1061
RsaNI GTAC 3 cut(s) 27, 532, 1060
RseI CAYNNNNRTG 2 cut(s) 577, 768
SaqAI TTAA 5 cut(s) 237, 560, 816, 825, 1077
SatI GCNGC 5 cut(s) 5, 163, 260, 460, 1046
Sau3AI GATC 2 cut(s) 397, 1009
Sau96I GGNCC 2 cut(s) 168, 1160
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 2 cut(s) 545, 866
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 1089
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 577, 768
SmlI CTYRAG 2 cut(s) 328, 815
SmoI CTYRAG 2 cut(s) 328, 815
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 5 cut(s) 465, 496, 610, 789, 870
SsiI CCGC 3 cut(s) 88, 163, 875
SspI AATATT 1 cut(s) 737
SspMI CTAG 4 cut(s) 24, 423, 482, 1164
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
TaqI TCGA 2 cut(s) 653, 1134
TasI AATT 5 cut(s) 465, 496, 610, 789, 870
TatI WGTACW 3 cut(s) 26, 531, 1059
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 9 cut(s) 95, 113, 320, 473, 523, 677, 711, 820, 988
Tru1I TTAA 5 cut(s) 237, 560, 816, 825, 1077
Tru9I TTAA 5 cut(s) 237, 560, 816, 825, 1077
TscAI CASTG 3 cut(s) 631, 724, 918
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 4 cut(s) 4, 259, 459, 1045
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 177, 971, 1079
TspRI CASTG 3 cut(s) 631, 724, 918
Van91I CCANNNNNTGG 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 4 cut(s) 24, 423, 482, 1164
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.