FvH4_2g17281

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005714
Physical Location & Seq
Forward (+)
14938965 .. 14940098
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17281.t1

Sequence Viewer

Length: 1134 bp
ATGGACTTGCCTGATGATTGCCTCTTCTTTATTTTCCAACGCCTTGATTCTTGCTCTGACCGTGAATCCTTTGGCTTGACTTGCCATCGCTGTCTTCGTATTCAAAATCTTAGCCGCCGGTCCTTGCAGTTTCAGTGTTCATTTACGCAACTGGACATTTCCTCATTATCACATTCCAGCATTACCATTAACAGTTCCCATGTCCATAGGCTGCTTACTCGCTTTCAGCATTTGCACTCATTGTCCCTATCTGGTTGCACACACGTACCTGATTCAAGCTTGAGCCATTTGGCAAGCTATGGTTCAAAGTTGCACACACTTCGCCTGGATTGCTGTTTTGGTATTACTGATAATGGGTTGTCTGTGGTAGCAACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAAATCTTGCTCAATATTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGGTTAAGAGCTCTTTCACAGAGGTGTCGTCAGCTTCAGGCAGTTAAGATATCAAATTGTAAGGGAGCCGCTGGTATTGGCTTTCAAGGTTGTTCTTCAACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGACCCAGAGGGCATTTCGGGAATCGTCAGCGGAGGTGGGATTGAATATTTAAACCTATCTGGTTTGATTTGGTGTAAAGGTGGAACTGGTTTGGGAATAATTGGAAGAGGGTTTGCTCTGAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGTGATGAGTCTATTGTAGCAATTGCAGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTTAGGATAGTTGGATGGTCTTCTATTGGGGCGAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCATGGTTTGGAGGCTTTGCGAAATGGTTGCAAGCAGCTCTCTATTCTGTACATGAACGGTTGTGTTAAGGTTACCCCTACAGCAGTAGAGTTGTTCAAATGTTATAGGGGTGATGTTACCATCAAGGTAGAAGAAAGAATGTGTATAGGGCCTATGTGGTCATTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

378

Amino Acids

41.38

Weight (kDa)

8.32

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 56 - 190 1.4e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 922
AccIII TCCGGA 1 cut(s) 783
AciI CCGC 3 cut(s) 115, 576, 672
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 3 cut(s) 267, 485, 1013
AfiI CCNNNNNNNGG 1 cut(s) 922
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 9 cut(s) 104, 276, 306, 466, 593, 606, 686, 848, 1060
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 529
AluBI AGCT 8 cut(s) 279, 297, 518, 541, 614, 626, 640, 1000
AluI AGCT 8 cut(s) 279, 297, 518, 541, 614, 626, 640, 1000
Alw21I GWGCWC 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 783
AoxI GGCC 1 cut(s) 1112
ApeKI GCWGC 3 cut(s) 211, 411, 997
Asp700I GAANNNNTTC 1 cut(s) 930
AspS9I GGNCC 2 cut(s) 120, 1112
AsuHPI GGTGA 2 cut(s) 815, 1085
AvaII GGWCC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 86, 888
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 3 cut(s) 198, 398, 1009
BccI CCATC 3 cut(s) 93, 885, 1091
BcgI CGANNNNNNTGC 4 cut(s) 302, 336, 972, 1006
BciT130I CCWGG 1 cut(s) 326
BclI TGATCA 1 cut(s) 961
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 2 cut(s) 375, 434
BfmI CTRYAG 1 cut(s) 1041
BfrI CTTAAG 1 cut(s) 767
BisI GCNGC 5 cut(s) 115, 212, 412, 576, 998
BlsI GCNGC 5 cut(s) 116, 213, 413, 577, 999
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 120, 1112
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 326
BpiI GAAGAC 2 cut(s) 86, 888
BpuEI CTTGAG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 783
Bsc4I CCNNNNNNNGG 1 cut(s) 922
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 156, 733
Bse8I GATNNNNATC 1 cut(s) 474
BseAI TCCGGA 1 cut(s) 783
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 3 cut(s) 475, 792, 896
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 922
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 2 cut(s) 156, 733
BseXI GCAGC 3 cut(s) 198, 398, 1009
BshFI GGCC 1 cut(s) 1114
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 2 cut(s) 118, 784
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 922
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 1114
Bsp1286I GDGCHC 1 cut(s) 520
Bsp13I TCCGGA 1 cut(s) 783
Bsp1407I TGTACA 1 cut(s) 1011
Bsp143I GATC 1 cut(s) 961
BspACI CCGC 3 cut(s) 115, 576, 672
BspANI GGCC 1 cut(s) 1114
BspCNI CTCAG 1 cut(s) 753
BspEI TCCGGA 1 cut(s) 783
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 156, 733
BssAI RCCGGY 1 cut(s) 117
BssMI GATC 1 cut(s) 961
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 5 cut(s) 62, 194, 799, 867, 1022
Bst6I CTCTTC 2 cut(s) 29, 742
BstAFI CTTAAG 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 1011
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 295, 638, 995
BstDEI CTNAG 3 cut(s) 110, 761, 859
BstEII GGTNACC 1 cut(s) 1033
BstF5I GGATG 3 cut(s) 475, 792, 896
BstKTI GATC 1 cut(s) 964
BstMBI GATC 1 cut(s) 961
BstMWI GCNNNNNNNGC 3 cut(s) 81, 330, 408
BstNI CCWGG 1 cut(s) 326
BstPI GGTNACC 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 1041
BstV1I GCAGC 3 cut(s) 198, 398, 1009
BstV2I GAAGAC 2 cut(s) 86, 888
BsuRI GGCC 1 cut(s) 1114
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 3 cut(s) 475, 792, 896
BtsIMutI CAGTG 2 cut(s) 140, 863
Cac8I GCNNGC 3 cut(s) 295, 638, 995
CciI TCATGA 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 120, 1112
Csp6I GTAC 3 cut(s) 266, 484, 1012
CviAII CATG 6 cut(s) 200, 491, 872, 935, 965, 1015
CviQI GTAC 3 cut(s) 266, 484, 1012
DdeI CTNAG 3 cut(s) 110, 761, 859
DpnI GATC 1 cut(s) 963
DpnII GATC 1 cut(s) 961
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 29, 742
EarI CTCTTC 2 cut(s) 29, 742
Ecl136II GAGCTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 1112
EcoO65I GGTNACC 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 324
EcoRV GATATC 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 6 cut(s) 203, 494, 875, 938, 968, 1018
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 199, 490, 871, 934, 964, 1014
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 5 cut(s) 115, 212, 412, 576, 998
FokI GGATG 3 cut(s) 482, 799, 903
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 5 cut(s) 115, 212, 412, 576, 998
FspBI CTAG 2 cut(s) 375, 434
GluI GCNGC 5 cut(s) 115, 212, 412, 576, 998
HaeIII GGCC 1 cut(s) 1114
HapII CCGG 2 cut(s) 118, 784
Hin1II CATG 6 cut(s) 203, 494, 875, 938, 968, 1018
HindIII AAGCTT 2 cut(s) 277, 638
HpaII CCGG 2 cut(s) 118, 784
HphI GGTGA 2 cut(s) 815, 1085
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 3 cut(s) 58, 502, 762
Hpy188III TCNNGA 3 cut(s) 660, 784, 872
Hpy8I GTNNAC 1 cut(s) 839
HpyAV CCTTC 2 cut(s) 460, 824
HpyCH4III ACNGT 5 cut(s) 62, 194, 799, 867, 1022
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 7 cut(s) 127, 235, 258, 313, 636, 827, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 330, 408
HpyF3I CTNAG 3 cut(s) 110, 761, 859
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 6 cut(s) 203, 494, 875, 938, 968, 1018
Kpn2I TCCGGA 1 cut(s) 783
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 1 cut(s) 961
LmnI GCTCC 1 cut(s) 572
Lsp1109I GCAGC 3 cut(s) 198, 398, 1009
MaeI CTAG 2 cut(s) 375, 434
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 1033, 1078
MalI GATC 1 cut(s) 963
MboI GATC 1 cut(s) 961
MboII GAAGA 7 cut(s) 16, 86, 594, 759, 860, 888, 1106
MfeI CAATTG 1 cut(s) 822
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 4 cut(s) 417, 562, 741, 822
MlyI GAGTC 2 cut(s) 497, 818
MmeI TCCRAC 3 cut(s) 61, 868, 903
MroI TCCGGA 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 930
MseI TTAA 8 cut(s) 189, 512, 552, 692, 768, 777, 1029, 1127
MslI CAYNNNNRTG 2 cut(s) 529, 1129
MspA1I CMGCKG 2 cut(s) 578, 672
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 2 cut(s) 118, 784
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 822
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 81, 330, 408
NdeII GATC 1 cut(s) 961
NlaIII CATG 6 cut(s) 203, 494, 875, 938, 968, 1018
NlaIV GGNNCC 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 529
PagI TCATGA 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 9 cut(s) 47, 65, 272, 425, 475, 629, 663, 772, 940
PflMI CCANNNNNTGG 1 cut(s) 922
PkrI GCNGC 5 cut(s) 116, 213, 413, 577, 999
PleI GAGTC 2 cut(s) 497, 817
PpsI GAGTC 2 cut(s) 497, 817
Ppu21I YACGTR 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 120, 1112
RsaI GTAC 3 cut(s) 267, 485, 1013
RsaNI GTAC 3 cut(s) 266, 484, 1012
RseI CAYNNNNRTG 2 cut(s) 529, 1129
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 8 cut(s) 189, 512, 552, 692, 768, 777, 1029, 1127
SatI GCNGC 5 cut(s) 115, 212, 412, 576, 998
Sau3AI GATC 1 cut(s) 961
Sau96I GGNCC 2 cut(s) 120, 1112
SchI GAGTC 2 cut(s) 497, 818
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 529, 1129
SmlI CTYRAG 2 cut(s) 280, 767
SmoI CTYRAG 2 cut(s) 280, 767
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 4 cut(s) 417, 562, 741, 822
SsiI CCGC 3 cut(s) 115, 576, 672
SspI AATATT 2 cut(s) 462, 689
SspMI CTAG 2 cut(s) 375, 434
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 5 cut(s) 62, 194, 799, 867, 1022
TaiI ACGT 1 cut(s) 267
TasI AATT 4 cut(s) 417, 562, 741, 822
TatI WGTACW 2 cut(s) 483, 1011
TauI GCSGC 2 cut(s) 117, 578
TfiI GAWTC 9 cut(s) 47, 65, 272, 425, 475, 629, 663, 772, 940
Tru1I TTAA 8 cut(s) 189, 512, 552, 692, 768, 777, 1029, 1127
Tru9I TTAA 8 cut(s) 189, 512, 552, 692, 768, 777, 1029, 1127
TscAI CASTG 2 cut(s) 140, 870
TseI GCWGC 3 cut(s) 211, 411, 997
TspDTI ATGAA 3 cut(s) 129, 923, 1031
TspRI CASTG 2 cut(s) 140, 870
Van91I CCANNNNNTGG 1 cut(s) 922
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 2 cut(s) 375, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.