RchiOBHm_Chr5g0064201

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005714
Physical Location & Seq
Reverse (-)
70066721 .. 70067603
883 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34025

Sequence Viewer

Length: 756 bp
ATGTCGTTTTGGTCTCACTGTTCTTGCATGTACTCTACTAGTTGCCCTTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTACCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCACCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAATCTTGCGCCAGAGGGCATTTCGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATTTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCATTGTGTCATGAGTTAGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTCTGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATCTTACTGTCGAGGTAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

251

Amino Acids

27.35

Weight (kDa)

6.9

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 10 - 228 3.7e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 447
AciI CCGC 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 32, 149, 632
AfiI CCNNNNNNNGG 1 cut(s) 208
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 6 cut(s) 130, 257, 350, 358, 512, 679
AhlI ACTAGT 1 cut(s) 38
AleI CACNNNNGTG 1 cut(s) 193
AluBI AGCT 5 cut(s) 205, 278, 290, 619, 738
AluI AGCT 5 cut(s) 205, 278, 290, 619, 738
Alw26I GTCTC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 1 cut(s) 731
ApeKI GCWGC 2 cut(s) 75, 616
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 191, 704
AxyI CCTNAGG 1 cut(s) 425
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 62, 628
BcgI CGANNNNNNTGC 2 cut(s) 591, 625
BcoDI GTCTC 1 cut(s) 18
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 3 cut(s) 39, 98, 735
BfmI CTRYAG 1 cut(s) 660
BfrI CTTAAG 1 cut(s) 431
BisI GCNGC 2 cut(s) 76, 617
BlsI GCNGC 2 cut(s) 77, 618
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 247, 397
Bse21I CCTNAGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 596
Bse8I GATNNNNATC 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 447
BseGI GGATG 2 cut(s) 139, 456
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 596
BseNI ACTGG 2 cut(s) 247, 397
BseXI GCAGC 2 cut(s) 62, 628
BshFI GGCC 1 cut(s) 733
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 733
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 580, 694
BspACI CCGC 1 cut(s) 491
BspANI GGCC 1 cut(s) 733
BspEI TCCGGA 1 cut(s) 447
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 596
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 2 cut(s) 247, 397
BssMI GATC 2 cut(s) 580, 694
Bst4CI ACNGT 4 cut(s) 20, 463, 641, 703
Bst6I CTCTTC 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 614
BstDEI CTNAG 2 cut(s) 425, 523
BstF5I GGATG 2 cut(s) 139, 456
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 2 cut(s) 583, 697
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 580, 694
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 62, 628
Bsu36I CCTNAGG 1 cut(s) 425
BsuRI GGCC 1 cut(s) 733
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 139, 456
BtsIMutI CAGTG 3 cut(s) 16, 240, 340
Cac8I GCNNGC 1 cut(s) 614
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 31, 148, 631
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 5 cut(s) 28, 155, 536, 554, 634
CviQI GTAC 3 cut(s) 31, 148, 631
DdeI CTNAG 2 cut(s) 425, 523
DpnI GATC 2 cut(s) 582, 696
DpnII GATC 2 cut(s) 580, 694
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 731
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 5 cut(s) 31, 158, 539, 557, 637
FatI CATG 5 cut(s) 27, 154, 535, 553, 633
Fnu4HI GCNGC 2 cut(s) 76, 617
FokI GGATG 2 cut(s) 146, 463
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 76, 617
FspBI CTAG 3 cut(s) 39, 98, 735
GlaI GCGC 1 cut(s) 309
GluI GCNGC 2 cut(s) 76, 617
HaeIII GGCC 1 cut(s) 733
HapII CCGG 1 cut(s) 448
HhaI GCGC 1 cut(s) 310
Hin1II CATG 5 cut(s) 31, 158, 539, 557, 637
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 8 cut(s) 89, 139, 167, 293, 327, 436, 473, 559
HpaII CCGG 1 cut(s) 448
HphI GGTGA 2 cut(s) 191, 704
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 324, 448, 536
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 57, 124, 488
HpyCH4III ACNGT 4 cut(s) 20, 463, 641, 703
HpyCH4V TGCA 3 cut(s) 27, 300, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 425, 523
Hsp92II CATG 5 cut(s) 31, 158, 539, 557, 637
HspAI GCGC 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 447
Kzo9I GATC 2 cut(s) 580, 694
LpnPI CCDG 9 cut(s) 78, 156, 194, 215, 228, 324, 378, 461, 724
Lsp1109I GCAGC 2 cut(s) 62, 628
MaeI CTAG 3 cut(s) 39, 98, 735
MaeIII GTNAC 2 cut(s) 197, 652
MalI GATC 2 cut(s) 582, 696
MboI GATC 2 cut(s) 580, 694
MboII GAAGA 3 cut(s) 423, 524, 725
MfeI CAATTG 2 cut(s) 405, 486
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 5 cut(s) 81, 112, 226, 405, 486
MlyI GAGTC 2 cut(s) 161, 482
MnlI CCTC 8 cut(s) 186, 277, 307, 332, 407, 455, 586, 700
MroI TCCGGA 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 4 cut(s) 176, 432, 441, 648
MslI CAYNNNNRTG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 1 cut(s) 448
MunI CAATTG 2 cut(s) 405, 486
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 2 cut(s) 580, 694
NlaIII CATG 5 cut(s) 31, 158, 539, 557, 637
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 193
PagI TCATGA 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 6 cut(s) 89, 139, 293, 327, 436, 559
PkrI GCNGC 2 cut(s) 77, 618
PleI GAGTC 2 cut(s) 161, 481
PpsI GAGTC 2 cut(s) 161, 481
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 731
RsaI GTAC 3 cut(s) 32, 149, 632
RsaNI GTAC 3 cut(s) 31, 148, 631
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 4 cut(s) 176, 432, 441, 648
SatI GCNGC 2 cut(s) 76, 617
Sau3AI GATC 2 cut(s) 580, 694
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 2 cut(s) 161, 482
SduI GDGCHC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 5 cut(s) 81, 112, 226, 405, 486
SsiI CCGC 1 cut(s) 491
SspI AATATT 1 cut(s) 353
SspMI CTAG 3 cut(s) 39, 98, 735
TaaI ACNGT 4 cut(s) 20, 463, 641, 703
TaqI TCGA 2 cut(s) 269, 705
TasI AATT 5 cut(s) 81, 112, 226, 405, 486
TatI WGTACW 3 cut(s) 30, 147, 630
TfiI GAWTC 6 cut(s) 89, 139, 293, 327, 436, 559
Tru1I TTAA 4 cut(s) 176, 432, 441, 648
Tru9I TTAA 4 cut(s) 176, 432, 441, 648
TscAI CASTG 3 cut(s) 23, 247, 340
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 75, 616
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 39, 542, 650
TspRI CASTG 3 cut(s) 23, 247, 340
Vha464I CTTAAG 1 cut(s) 431
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 39, 98, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.