Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Reverse (-)

31331452 .. 31334835

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGGGCAACGGGCAACGGGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGATCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTGAGGATATCAAATTGTAAGGATGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCTAGAGGGCATTTCGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAAGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCAAAAGTTGGAAAAACTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

164

Amino Acids

17.46

Weight (kDa)

8.09

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	2 cut(s)	4, 380
AclWI	GGATC	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	146, 239, 247, 401
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	94, 167, 179, 193
AluI	AGCT	4 cut(s)	94, 167, 179, 193
AlwI	GGATC	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	136, 286
Bse21I	CCTNAGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	336
BseGI	GGATG	3 cut(s)	28, 130, 345
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	136, 286
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	4, 380
BspEI	TCCGGA	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	424
BspPI	GGATC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	136, 286
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	352, 420
Bst6I	CTCTTC	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	6, 92, 191, 195
BstDEI	CTNAG	2 cut(s)	314, 412
BstF5I	GGATG	3 cut(s)	28, 130, 345
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	28, 130, 345
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	4 cut(s)	108, 129, 229, 416
Cac8I	GCNNGC	4 cut(s)	6, 92, 191, 195
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	3 cut(s)	44, 425, 487
CviJI	RGCY	6 cut(s)	94, 141, 167, 179, 193, 319
CviKI_1	RGCY	6 cut(s)	94, 141, 167, 179, 193, 319
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	314, 412
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	3 cut(s)	47, 428, 490
FaiI	YATR	4 cut(s)	45, 171, 426, 488
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	43, 424, 486
FokI	GGATG	3 cut(s)	35, 137, 352
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	47, 428, 490
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	6 cut(s)	28, 56, 182, 216, 325, 362
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	4 cut(s)	213, 337, 425, 433
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	352, 420
HpyCH4V	TGCA	2 cut(s)	189, 468
HpyF3I	CTNAG	2 cut(s)	314, 412
Hsp92II	CATG	3 cut(s)	47, 428, 490
HspAI	GCGC	1 cut(s)	197
Kpn2I	TCCGGA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	45, 83, 104, 117, 240, 267, 350
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	200
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	3 cut(s)	312, 413, 441
MfeI	CAATTG	2 cut(s)	294, 375
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	3 cut(s)	115, 294, 375
MlyI	GAGTC	2 cut(s)	50, 371
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	8 cut(s)	75, 99, 166, 196, 221, 296, 344, 421
MroI	TCCGGA	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	3 cut(s)	65, 321, 330
MslI	CAYNNNNRTG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	2 cut(s)	294, 375
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	47, 428, 490
OliI	CACNNNNGTG	1 cut(s)	82
PagI	TCATGA	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	4 cut(s)	28, 182, 216, 325
PleI	GAGTC	2 cut(s)	50, 370
PpsI	GAGTC	2 cut(s)	50, 370
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	65, 321, 330
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	50, 371
SfaNI	GCATC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	115, 294, 375
SsiI	CCGC	2 cut(s)	4, 380
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	352, 420
TaqI	TCGA	1 cut(s)	158
TasI	AATT	3 cut(s)	115, 294, 375
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	4 cut(s)	28, 182, 216, 325
Tru1I	TTAA	3 cut(s)	65, 321, 330
Tru9I	TTAA	3 cut(s)	65, 321, 330
TscAI	CASTG	4 cut(s)	108, 136, 229, 423
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	4 cut(s)	108, 136, 229, 423
Vha464I	CTTAAG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.