Rh6BG259500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005714
Physical Location & Seq
Forward (+)
47303932 .. 47305116
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG259500.1

Sequence Viewer

Length: 1185 bp
ATGCAGCAAACTACTTGTAACTCTAGTACTAATGCTCTTACTTCCATTATGGACTTGCCTGATGATTGTCTCTTCTTTATTTTACACCGCCTTGATTCTTCCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGCTGTCTTCGTATTCAAAATCTTAGGCGCCGGTCCTTGCAGTTTGAGTGTTCATTTAAGCAACTTGACAAACCCTCGTTATCACATTCCAACATTACCATTAACAGCTCCCATGTCCATAGGCTGCTTACTCGCTTTCAGCATTTGTGCTCATTGTCCCTATCTGGTTGCACACACTTACCTGATTCAAGCTTGAGCCATTTGGCAAGCTATGGTTCAAAGTTGCACACACTTCACCTGGATTGCTGTTTTGGTATTACTGATCATGGGTTGTCTGTGGTAGCTACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGTCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGTGCCAGAGGGCATTTCGGGAATCATCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGCGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTCTGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTCGAGGTAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

394

Amino Acids

43.19

Weight (kDa)

8.2

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 82 - 208 2.9e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 140 - 290 9.8e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 281 - 371 9.8e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 970
AccIII TCCGGA 1 cut(s) 831
AciI CCGC 3 cut(s) 88, 768, 875
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 3 cut(s) 28, 533, 1061
AfiI CCNNNNNNNGG 2 cut(s) 592, 970
AflII CTTAAG 1 cut(s) 815
AgsI TTSAA 9 cut(s) 152, 324, 354, 514, 641, 734, 742, 896, 1108
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 372
AleI CACNNNNGTG 1 cut(s) 577
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 831
AoxI GGCC 1 cut(s) 1160
ApeKI GCWGC 4 cut(s) 4, 259, 459, 1045
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 168, 1160
AsuHPI GGTGA 2 cut(s) 362, 1133
AvaII GGWCC 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 809
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 2 cut(s) 134, 936
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 16, 246, 446, 1057
BcgI CGANNNNNNTGC 2 cut(s) 1020, 1054
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 4 cut(s) 24, 423, 482, 1164
BfmI CTRYAG 1 cut(s) 1089
BfoI RGCGCY 1 cut(s) 166
BfrI CTTAAG 1 cut(s) 815
BisI GCNGC 4 cut(s) 5, 260, 460, 1046
BlsI GCNGC 4 cut(s) 6, 261, 461, 1047
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 168, 1160
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 374
BpiI GAAGAC 2 cut(s) 134, 936
BpuEI CTTGAG 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 831
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 970
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 631, 781
Bse21I CCTNAGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 831
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 523, 840
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 592, 970
BseMI GCAATG 1 cut(s) 1025
BseNI ACTGG 2 cut(s) 631, 781
BseXI GCAGC 4 cut(s) 16, 246, 446, 1057
BshFI GGCC 1 cut(s) 1162
BshNI GGYRCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 2 cut(s) 166, 832
BslFI GGGAC 2 cut(s) 277, 967
BslI CCNNNNNNNGG 2 cut(s) 592, 970
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 277, 967
BsnI GGCC 1 cut(s) 1162
Bsp1286I GDGCHC 2 cut(s) 287, 568
Bsp13I TCCGGA 1 cut(s) 831
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 2 cut(s) 397, 1009
BspACI CCGC 3 cut(s) 88, 768, 875
BspANI GGCC 1 cut(s) 1162
BspEI TCCGGA 1 cut(s) 831
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 162
BspTI CTTAAG 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 2 cut(s) 631, 781
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 397, 1009
BssNI GRCGYC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
Bst6I CTCTTC 2 cut(s) 77, 790
BstACI GRCGYC 1 cut(s) 163
BstAFI CTTAAG 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 1059
BstC8I GCNNGC 4 cut(s) 343, 587, 686, 1043
BstDEI CTNAG 3 cut(s) 158, 809, 907
BstF5I GGATG 2 cut(s) 523, 840
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 400, 1012
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 397, 1009
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 1089
BstV1I GCAGC 4 cut(s) 16, 246, 446, 1057
BstV2I GAAGAC 2 cut(s) 134, 936
Bsu36I CCTNAGG 1 cut(s) 809
BsuRI GGCC 1 cut(s) 1162
BtgZI GCGATG 2 cut(s) 119, 867
BtsCI GGATG 2 cut(s) 523, 840
BtsIMutI CAGTG 3 cut(s) 624, 724, 911
Cac8I GCNNGC 4 cut(s) 343, 587, 686, 1043
CciI TCATGA 1 cut(s) 919
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 168, 1160
Csp6I GTAC 3 cut(s) 27, 532, 1060
CviAII CATG 6 cut(s) 248, 401, 539, 920, 983, 1063
CviQI GTAC 3 cut(s) 27, 532, 1060
DdeI CTNAG 3 cut(s) 158, 809, 907
DinI GGCGCC 1 cut(s) 164
DpnI GATC 2 cut(s) 399, 1011
DpnII GATC 2 cut(s) 397, 1009
Eam1104I CTCTTC 2 cut(s) 77, 790
EarI CTCTTC 2 cut(s) 77, 790
Eco24I GRGCYC 1 cut(s) 568
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 568
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
FaeI CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
FaqI GGGAC 2 cut(s) 277, 967
FatI CATG 6 cut(s) 247, 400, 538, 919, 982, 1062
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 5, 260, 460, 1046
FokI GGATG 2 cut(s) 530, 847
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 4 cut(s) 5, 260, 460, 1046
FspBI CTAG 4 cut(s) 24, 423, 482, 1164
GlaI GCGC 1 cut(s) 164
GluI GCNGC 4 cut(s) 5, 260, 460, 1046
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 1 cut(s) 1162
HapII CCGG 2 cut(s) 166, 832
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 325, 686
HpaII CCGG 2 cut(s) 166, 832
HphI GGTGA 2 cut(s) 362, 1133
Hpy166II GTNNAC 1 cut(s) 887
Hpy188I TCNGA 2 cut(s) 106, 550
Hpy188III TCNNGA 4 cut(s) 708, 832, 920, 928
Hpy8I GTNNAC 1 cut(s) 887
HpyAV CCTTC 2 cut(s) 508, 872
HpyCH4III ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
HpyCH4V TGCA 6 cut(s) 4, 175, 306, 361, 684, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 3 cut(s) 158, 809, 907
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
HspAI GCGC 1 cut(s) 163
KasI GGCGCC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 831
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 2 cut(s) 397, 1009
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 16, 246, 446, 1057
MaeI CTAG 4 cut(s) 24, 423, 482, 1164
MaeIII GTNAC 4 cut(s) 17, 622, 1081, 1126
MalI GATC 2 cut(s) 399, 1011
MboI GATC 2 cut(s) 397, 1009
MboII GAAGA 7 cut(s) 64, 90, 134, 807, 908, 936, 1154
MfeI CAATTG 2 cut(s) 789, 870
MhlI GDGCHC 2 cut(s) 287, 568
MluCI AATT 5 cut(s) 465, 496, 610, 789, 870
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 2 cut(s) 545, 866
MmeI TCCRAC 2 cut(s) 249, 951
MroI TCCGGA 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 978
MseI TTAA 6 cut(s) 192, 237, 560, 816, 825, 1077
MslI CAYNNNNRTG 1 cut(s) 577
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 166, 832
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 2 cut(s) 789, 870
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 456
NarI GGCGCC 1 cut(s) 163
NdeII GATC 2 cut(s) 397, 1009
NlaIII CATG 6 cut(s) 251, 404, 542, 923, 986, 1066
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 577
PagI TCATGA 1 cut(s) 919
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 9 cut(s) 95, 113, 320, 473, 523, 677, 711, 820, 988
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 4 cut(s) 6, 261, 461, 1047
PleI GAGTC 2 cut(s) 545, 865
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 2 cut(s) 545, 865
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 168, 1160
RsaI GTAC 3 cut(s) 28, 533, 1061
RsaNI GTAC 3 cut(s) 27, 532, 1060
RseI CAYNNNNRTG 1 cut(s) 577
SaqAI TTAA 6 cut(s) 192, 237, 560, 816, 825, 1077
SatI GCNGC 4 cut(s) 5, 260, 460, 1046
Sau3AI GATC 2 cut(s) 397, 1009
Sau96I GGNCC 2 cut(s) 168, 1160
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 2 cut(s) 545, 866
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 2 cut(s) 287, 568
SfcI CTRYAG 1 cut(s) 1089
SfoI GGCGCC 1 cut(s) 164
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 328, 815
SmoI CTYRAG 2 cut(s) 328, 815
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 5 cut(s) 465, 496, 610, 789, 870
SsiI CCGC 3 cut(s) 88, 768, 875
SspDI GGCGCC 1 cut(s) 162
SspI AATATT 1 cut(s) 737
SspMI CTAG 4 cut(s) 24, 423, 482, 1164
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 5 cut(s) 110, 847, 915, 1070, 1132
TaqI TCGA 2 cut(s) 653, 1134
TasI AATT 5 cut(s) 465, 496, 610, 789, 870
TatI WGTACW 3 cut(s) 26, 531, 1059
TfiI GAWTC 9 cut(s) 95, 113, 320, 473, 523, 677, 711, 820, 988
Tru1I TTAA 6 cut(s) 192, 237, 560, 816, 825, 1077
Tru9I TTAA 6 cut(s) 192, 237, 560, 816, 825, 1077
TscAI CASTG 3 cut(s) 631, 724, 918
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 4 cut(s) 4, 259, 459, 1045
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 177, 971, 1079
TspRI CASTG 3 cut(s) 631, 724, 918
Van91I CCANNNNNTGG 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 4 cut(s) 24, 423, 482, 1164
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.