Rh7CG328800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005714
Physical Location & Seq
Forward (+)
36187249 .. 36188957
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG328800.1

Sequence Viewer

Length: 714 bp
ATGCGTGACAGGGAACAAAGTGAAGAGGAGAAAAGGAGAAGAAGAAGGAAGAGCGTTCGTAAGTTGAAGCTTGAATATCTGGTTTTAGAAGCAAAGGTCGTCCATATTATCCTGGTTTCATTCATTGTTTGCACTCAGGCGATAGCTACTAGTTGCCCTTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGAGCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCCAGAGGGCATTTTGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTAGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGTGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCAAAAGTTGGAAAAACTTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

237

Amino Acids

26.12

Weight (kDa)

8.91

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 48 - 199 4.6e-08 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 319
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 7 cut(s) 67, 74, 241, 368, 461, 469, 623
AhlI ACTAGT 2 cut(s) 149, 503
AjnI CCWGG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 304
AluBI AGCT 7 cut(s) 70, 146, 295, 316, 389, 401, 415
AluI AGCT 7 cut(s) 70, 146, 295, 316, 389, 401, 415
Aor13HI TCCGGA 1 cut(s) 558
ApeKI GCWGC 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 704
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 536
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 663
BbvI GCAGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 113
BcuI ACTAGT 2 cut(s) 149, 503
BfaI CTAG 3 cut(s) 150, 209, 504
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 536
Bse8I GATNNNNATC 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 250, 567
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 559
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 694
Bsp13I TCCGGA 1 cut(s) 558
BspACI CCGC 1 cut(s) 602
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 558
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 542
BsrI ACTGG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 574, 642
Bst6I CTCTTC 3 cut(s) 18, 44, 517
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 314, 413, 417
BstDEI CTNAG 3 cut(s) 135, 536, 634
BstF5I GGATG 2 cut(s) 250, 567
BstHHI GCGC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 663
Bsu36I CCTNAGG 1 cut(s) 536
BtsCI GGATG 2 cut(s) 250, 567
BtsIMutI CAGTG 3 cut(s) 351, 451, 638
Cac8I GCNNGC 3 cut(s) 314, 413, 417
CciI TCATGA 1 cut(s) 646
CfoI GCGC 1 cut(s) 421
Csp6I GTAC 1 cut(s) 259
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 3 cut(s) 266, 647, 709
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 135, 536, 634
Eam1104I CTCTTC 3 cut(s) 18, 44, 517
EarI CTCTTC 3 cut(s) 18, 44, 517
Eco32I GATATC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 333
FaeI CATG 3 cut(s) 269, 650, 712
FaiI YATR 5 cut(s) 105, 267, 393, 648, 710
FaqI GGGAC 1 cut(s) 694
FatI CATG 3 cut(s) 265, 646, 708
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 2 cut(s) 257, 574
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 3 cut(s) 150, 209, 504
GlaI GCGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 187
HapII CCGG 1 cut(s) 559
HhaI GCGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 269, 650, 712
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 2 cut(s) 68, 413
HinfI GANTC 7 cut(s) 200, 250, 278, 404, 438, 547, 584
HpaII CCGG 1 cut(s) 559
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 3 cut(s) 559, 647, 655
Hpy8I GTNNAC 1 cut(s) 614
HpyAV CCTTC 4 cut(s) 39, 168, 235, 599
HpyCH4III ACNGT 2 cut(s) 574, 642
HpyCH4V TGCA 3 cut(s) 132, 411, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 3 cut(s) 135, 536, 634
Hsp92II CATG 3 cut(s) 269, 650, 712
HspAI GCGC 1 cut(s) 419
Kpn2I TCCGGA 1 cut(s) 558
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 1 cut(s) 173
MaeI CTAG 3 cut(s) 150, 209, 504
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 7 cut(s) 35, 51, 54, 61, 534, 635, 663
MfeI CAATTG 2 cut(s) 516, 597
MluCI AATT 5 cut(s) 192, 223, 337, 516, 597
MlyI GAGTC 2 cut(s) 272, 593
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 8 cut(s) 19, 297, 388, 418, 443, 518, 566, 643
MroI TCCGGA 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 704
MseI TTAA 3 cut(s) 287, 543, 552
MslI CAYNNNNRTG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 2 cut(s) 516, 597
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 183
NlaIII CATG 3 cut(s) 269, 650, 712
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 5
OliI CACNNNNGTG 1 cut(s) 304
PagI TCATGA 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 5 cut(s) 200, 250, 404, 438, 547
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 2 cut(s) 272, 592
PpsI GAGTC 2 cut(s) 272, 592
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 287, 543, 552
SatI GCNGC 1 cut(s) 187
SchI GAGTC 2 cut(s) 272, 593
ScrFI CCNGG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SpeI ACTAGT 2 cut(s) 149, 503
Sse9I AATT 5 cut(s) 192, 223, 337, 516, 597
SsiI CCGC 1 cut(s) 602
SspI AATATT 1 cut(s) 464
SspMI CTAG 3 cut(s) 150, 209, 504
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 574, 642
TaqI TCGA 1 cut(s) 380
TasI AATT 5 cut(s) 192, 223, 337, 516, 597
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 5 cut(s) 200, 250, 404, 438, 547
Tru1I TTAA 3 cut(s) 287, 543, 552
Tru9I TTAA 3 cut(s) 287, 543, 552
TscAI CASTG 3 cut(s) 358, 451, 645
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 186
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 108, 112, 150, 697
TspRI CASTG 3 cut(s) 358, 451, 645
Vha464I CTTAAG 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 704
XspI CTAG 3 cut(s) 150, 209, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.