Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005714

Physical Location & Seq

Genomic Coordinates Reverse (-)

26159843 .. 26161973

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTCCCAACCTGCTCCTGAGGTGTCCTACAGTTGTGGGTCTTGTGGATACCCTTTGCATTTGTCATCTGCAAATCGTACTGCCTCTGGTTCTGGGATAGGGTCTGACTATCAGAAATCTGTCAAGAAAGGTTTTATTTCCTTCCTTACGGTTGATCTAAGTCGGTTCACGCAGGTTGATGAGCTTTACAGCCCTCTGAAGAGTGCTAAAATGCAGCAAACTACTTGTAACTCTAGTACTAATGCTCTTTCTTCCATTATGGACTTGCCTGATGATTGTCTCTTCTTTATTTTCCACCGCCTTGATTCTTGCTCTGACCGTGAATCCTTTGGCTTGACTTGTCATCGCTGTCTTCGTATTCAAAATCTTAGCCGCCGGTCCTTGCAGTTTGAGTGTTCATTTAGGCAACTTCACAAATCCTCATTGTCACATTCCAACATTACCATTAACAGCTCCCATGTCCATAGGCTGCTTACTCGCTTTCAGCATTTGCGCTCATTGTCCCTATCTGGTTGCACACACTTACCTGATTCAAGCTTGAGCTATTTGGCAAGCTATGGTTCAAAGTTGCACACACTTCACCTGGATTGCTGTTTTGGTATTACTGATCATGGGTTGTCTGTGGTAGCTACTAGTTGCCCCTCATTACAAGTCATCAGCCTTTATCGCTGCCAAATTACTGATTCTGGGCTAGAAAGTTTGTCTAATTCTTGCTCAACTTTGAAGGATGTGAATCTCTTGTACTGCCATGCTATTTCTGACTCTGGTTTAAGGGCTCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGTCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCCAGAGGGCATTTCAGGAATCGTCAGTGGAGGTGGGACTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACTGTTGGCGATGAGTCTATTGAAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCCAAAAGTTGGAAAAACTTCATGTGAATCGGTGTCGCAATCTATGTGATCGTGGTTTGGAGGCATTGCGAAATGGTTGCAAGCAGCTCTCTGTTCTGTACATGAACGGTTGTGTTAAGGTTACATCTACAGCAGTAGAGATATTCAAATGTTATAGGGGTGATGTTACTGTCGAGGCAGAAGAAAAGATGTGTATAGGGCCTAGCTGGTCATTATGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

464

Amino Acids

50.69

Weight (kDa)

8.35

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At4g08330	PF24046	6 - 63	7.8e-20	At4g08330 beta-tent
DUF7885	PF25372	151 - 279	7.7e-08	Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885	PF25372	201 - 360	3.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07550 AT3G07550 AT3G07550
fragaria_vesca	FvH4_2g17281
malus_domestica	MD05G1151800.v1.1 MD10G1146000.v1.1
prunus_persica	Prupe.8G184400_v2.0.a1
pyrus_communis	pycom05g14620
rosa_chinensis	RchiOBHm_Chr5g0064201 RchiOBHm_Chr6g0281791 RchiOBHm_Chr7g0205731
rosa_laevigata	RLG00000008497 RLG00000012934
rosa_multiflora	Rmu_sc0002083.1_g000004 Rmu_ssc0000126.1_g000045
rosa_roxburghii	Rroxscaffold_1G00055070 Rroxscaffold_7G00186800
rosa_rugosa	Rorug04G0090400
rosa_samantha	Rh6AG256500 Rh6BG259500 Rh6CG258400 Rh6DG250500 Rh7AG309600 Rh7CG118900 Rh7CG328800 Rh7CG497900 Rh7DG466000
rosa_wichuraiana	Rw6G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	19, 163
AccB7I	CCANNNNNTGG	1 cut(s)	1180
AccIII	TCCGGA	1 cut(s)	1041
AciI	CCGC	3 cut(s)	298, 373, 1085
AcuI	CTGAAG	2 cut(s)	218, 785
AfaI	GTAC	4 cut(s)	79, 238, 743, 1271
AfiI	CCNNNNNNNGG	2 cut(s)	802, 1180
AflII	CTTAAG	1 cut(s)	1025
AgsI	TTSAA	9 cut(s)	362, 534, 564, 724, 851, 952, 1076, 1106, 1318
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	787
Alw26I	GTCTC	1 cut(s)	284
Aor13HI	TCCGGA	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	1370
ApeKI	GCWGC	4 cut(s)	214, 469, 669, 1255
ArsI	GACNNNNNNTTYG	2 cut(s)	931, 963
Asp700I	GAANNNNTTC	1 cut(s)	1188
AspLEI	GCGC	2 cut(s)	495, 904
AspS9I	GGNCC	2 cut(s)	378, 1370
AsuHPI	GGTGA	2 cut(s)	572, 1343
AvaII	GGWCC	1 cut(s)	378
AxyI	CCTNAGG	2 cut(s)	18, 1019
BanII	GRGCYC	1 cut(s)	778
BbsI	GAAGAC	2 cut(s)	344, 1146
BbvI	GCAGC	4 cut(s)	226, 456, 656, 1267
BcgI	CGANNNNNNTGC	2 cut(s)	1230, 1264
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	284
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	4 cut(s)	234, 633, 692, 1374
BfmI	CTRYAG	2 cut(s)	28, 1299
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	2 cut(s)	19, 163
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	5 cut(s)	215, 373, 470, 670, 1256
BlsI	GCNGC	5 cut(s)	216, 374, 471, 671, 1257
BmcAI	AGTACT	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	378, 1370
BmrFI	CCNGG	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	344, 1146
BpuEI	CTTGAG	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	732
BsaWI	WCCGGW	1 cut(s)	1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	802, 1180
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	841, 991
Bse21I	CCTNAGG	2 cut(s)	18, 1019
Bse3DI	GCAATG	1 cut(s)	1235
Bse8I	GATNNNNATC	1 cut(s)	732
BseAI	TCCGGA	1 cut(s)	1041
BseBI	CCWGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	733, 1050
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	802, 1180
BseMI	GCAATG	1 cut(s)	1235
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	841, 991
BseXI	GCAGC	4 cut(s)	226, 456, 656, 1267
BshFI	GGCC	1 cut(s)	1372
BsiSI	CCGG	2 cut(s)	376, 1042
BslFI	GGGAC	3 cut(s)	487, 952, 1177
BslI	CCNNNNNNNGG	2 cut(s)	802, 1180
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	3 cut(s)	487, 952, 1177
BsnI	GGCC	1 cut(s)	1372
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp13I	TCCGGA	1 cut(s)	1041
Bsp1407I	TGTACA	1 cut(s)	1269
Bsp143I	GATC	3 cut(s)	154, 607, 1219
BspACI	CCGC	3 cut(s)	298, 373, 1085
BspANI	GGCC	1 cut(s)	1372
BspCNI	CTCAG	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	1041
BspHI	TCATGA	1 cut(s)	1129
BspMI	ACCTGC	2 cut(s)	19, 163
BspTI	CTTAAG	1 cut(s)	1025
BsrDI	GCAATG	1 cut(s)	1235
BsrFI	RCCGGY	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	1269
BsrI	ACTGG	2 cut(s)	841, 991
BssAI	RCCGGY	1 cut(s)	375
BssMI	GATC	3 cut(s)	154, 607, 1219
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	7 cut(s)	32, 151, 320, 1057, 1125, 1280, 1342
Bst6I	CTCTTC	3 cut(s)	194, 287, 1000
BstAFI	CTTAAG	1 cut(s)	1025
BstAUI	TGTACA	1 cut(s)	1269
BstC8I	GCNNGC	5 cut(s)	553, 797, 896, 900, 1253
BstDEI	CTNAG	5 cut(s)	18, 158, 368, 1019, 1117
BstF5I	GGATG	2 cut(s)	733, 1050
BstHHI	GCGC	2 cut(s)	495, 904
BstKTI	GATC	3 cut(s)	157, 610, 1222
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	3 cut(s)	154, 607, 1219
BstMWI	GCNNNNNNNGC	1 cut(s)	666
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	2 cut(s)	28, 1299
BstV1I	GCAGC	4 cut(s)	226, 456, 656, 1267
BstV2I	GAAGAC	2 cut(s)	344, 1146
Bsu36I	CCTNAGG	2 cut(s)	18, 1019
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	1372
BtgZI	GCGATG	2 cut(s)	329, 1077
BtsCI	GGATG	2 cut(s)	733, 1050
BtsIMutI	CAGTG	3 cut(s)	834, 934, 1121
BveI	ACCTGC	2 cut(s)	19, 163
Cac8I	GCNNGC	5 cut(s)	553, 797, 896, 900, 1253
CciI	TCATGA	1 cut(s)	1129
CfoI	GCGC	2 cut(s)	495, 904
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	378, 1370
Csp6I	GTAC	4 cut(s)	78, 237, 742, 1270
CviAII	CATG	6 cut(s)	458, 611, 749, 1130, 1193, 1273
CviQI	GTAC	4 cut(s)	78, 237, 742, 1270
DdeI	CTNAG	5 cut(s)	18, 158, 368, 1019, 1117
DpnI	GATC	3 cut(s)	156, 609, 1221
DpnII	GATC	3 cut(s)	154, 607, 1219
Eam1104I	CTCTTC	3 cut(s)	194, 287, 1000
EarI	CTCTTC	3 cut(s)	194, 287, 1000
Eco24I	GRGCYC	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	218, 785
Eco81I	CCTNAGG	2 cut(s)	18, 1019
EcoO109I	RGGNCCY	1 cut(s)	1370
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	778
FaeI	CATG	6 cut(s)	461, 614, 752, 1133, 1196, 1276
FaqI	GGGAC	3 cut(s)	487, 952, 1177
FatI	CATG	6 cut(s)	457, 610, 748, 1129, 1192, 1272
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	5 cut(s)	215, 373, 470, 670, 1256
FokI	GGATG	2 cut(s)	740, 1057
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	5 cut(s)	215, 373, 470, 670, 1256
FspBI	CTAG	4 cut(s)	234, 633, 692, 1374
GlaI	GCGC	2 cut(s)	494, 903
GluI	GCNGC	5 cut(s)	215, 373, 470, 670, 1256
HaeIII	GGCC	1 cut(s)	1372
HapII	CCGG	2 cut(s)	376, 1042
HhaI	GCGC	2 cut(s)	495, 904
Hin1II	CATG	6 cut(s)	461, 614, 752, 1133, 1196, 1276
Hin6I	GCGC	2 cut(s)	493, 902
HinP1I	GCGC	2 cut(s)	493, 902
HindIII	AAGCTT	2 cut(s)	535, 896
HpaII	CCGG	2 cut(s)	376, 1042
HphI	GGTGA	2 cut(s)	572, 1343
Hpy166II	GTNNAC	2 cut(s)	168, 1097
Hpy188I	TCNGA	5 cut(s)	106, 114, 198, 316, 760
Hpy188III	TCNNGA	6 cut(s)	17, 124, 918, 1042, 1130, 1138
Hpy8I	GTNNAC	2 cut(s)	168, 1097
HpyAV	CCTTC	3 cut(s)	151, 718, 1082
HpyCH4III	ACNGT	7 cut(s)	32, 151, 320, 1057, 1125, 1280, 1342
HpyCH4V	TGCA	8 cut(s)	58, 71, 214, 385, 516, 571, 894, 1251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	666
HpyF3I	CTNAG	5 cut(s)	18, 158, 368, 1019, 1117
Hsp92II	CATG	6 cut(s)	461, 614, 752, 1133, 1196, 1276
HspAI	GCGC	2 cut(s)	493, 902
Kpn2I	TCCGGA	1 cut(s)	1041
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	154, 607, 1219
LmnI	GCTCC	2 cut(s)	19, 458
Lsp1109I	GCAGC	4 cut(s)	226, 456, 656, 1267
MaeI	CTAG	4 cut(s)	234, 633, 692, 1374
MaeIII	GTNAC	5 cut(s)	227, 426, 832, 1291, 1336
MalI	GATC	3 cut(s)	156, 609, 1221
MboI	GATC	3 cut(s)	154, 607, 1219
MboII	GAAGA	8 cut(s)	211, 243, 274, 344, 1017, 1118, 1146, 1364
MfeI	CAATTG	2 cut(s)	999, 1080
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	5 cut(s)	675, 706, 820, 999, 1080
MlyI	GAGTC	2 cut(s)	755, 1076
MmeI	TCCRAC	2 cut(s)	459, 1161
MroI	TCCGGA	1 cut(s)	1041
MroXI	GAANNNNTTC	1 cut(s)	1188
MseI	TTAA	5 cut(s)	447, 770, 1026, 1035, 1287
MslI	CAYNNNNRTG	1 cut(s)	787
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	376, 1042
MspR9I	CCNGG	1 cut(s)	584
MunI	CAATTG	2 cut(s)	999, 1080
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	666
NdeII	GATC	3 cut(s)	154, 607, 1219
NlaIII	CATG	6 cut(s)	461, 614, 752, 1133, 1196, 1276
NmuCI	GTSAC	2 cut(s)	426, 832
OliI	CACNNNNGTG	1 cut(s)	787
PagI	TCATGA	1 cut(s)	1129
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	1188
PfeI	GAWTC	9 cut(s)	305, 323, 530, 683, 733, 887, 921, 1030, 1198
PflMI	CCANNNNNTGG	1 cut(s)	1180
PkrI	GCNGC	5 cut(s)	216, 374, 471, 671, 1257
PleI	GAGTC	2 cut(s)	755, 1075
PpsI	GAGTC	2 cut(s)	755, 1075
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	378, 1370
RsaI	GTAC	4 cut(s)	79, 238, 743, 1271
RsaNI	GTAC	4 cut(s)	78, 237, 742, 1270
RseI	CAYNNNNRTG	1 cut(s)	787
SaqAI	TTAA	5 cut(s)	447, 770, 1026, 1035, 1287
SatI	GCNGC	5 cut(s)	215, 373, 470, 670, 1256
Sau3AI	GATC	3 cut(s)	154, 607, 1219
Sau96I	GGNCC	2 cut(s)	378, 1370
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	755, 1076
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	778
SfcI	CTRYAG	2 cut(s)	28, 1299
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	787
SmlI	CTYRAG	2 cut(s)	538, 1025
SmoI	CTYRAG	2 cut(s)	538, 1025
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	5 cut(s)	675, 706, 820, 999, 1080
SsiI	CCGC	3 cut(s)	298, 373, 1085
SspI	AATATT	1 cut(s)	947
SspMI	CTAG	4 cut(s)	234, 633, 692, 1374
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	7 cut(s)	32, 151, 320, 1057, 1125, 1280, 1342
TaqI	TCGA	2 cut(s)	863, 1344
TasI	AATT	5 cut(s)	675, 706, 820, 999, 1080
TatI	WGTACW	3 cut(s)	236, 741, 1269
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	9 cut(s)	305, 323, 530, 683, 733, 887, 921, 1030, 1198
Tru1I	TTAA	5 cut(s)	447, 770, 1026, 1035, 1287
Tru9I	TTAA	5 cut(s)	447, 770, 1026, 1035, 1287
TscAI	CASTG	3 cut(s)	841, 934, 1128
TseFI	GTSAC	2 cut(s)	426, 832
TseI	GCWGC	4 cut(s)	214, 469, 669, 1255
Tsp45I	GTSAC	2 cut(s)	426, 832
TspDTI	ATGAA	3 cut(s)	387, 1181, 1289
TspRI	CASTG	3 cut(s)	841, 934, 1128
Van91I	CCANNNNNTGG	1 cut(s)	1180
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	1188
XspI	CTAG	4 cut(s)	234, 633, 692, 1374
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.