AT3G07880

Rho GDP-dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003575
Physical Location & Seq
Forward (+)
2513925 .. 2515983
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07880.1

Sequence Viewer

Length: 723 bp
ATGTCTTTGGTATCTGGAGCCAGGGACATGGGGTTCGACGACAACAACAACAACAAGAACAACAAGGATGGAGATGATGAGAACTCCTCCTCCAGAACAAGAGCCGACGACGATGCTCTTAGTCGACAGATGAGCGAATCTTCTCTTTGTGCTACCGAGGAGGAAGAAGACGACGATTCCAAATTGCAATTGGGTCCTCAGTACACTATCAAAGAACATCTCGAGAAGGACAAGGATGATGAGAGTCTGAGGAAATGGAAGGAACAGCTTCTCGGAAGTGTTGATGTCACCAACATTGGAGAGACTCTTGATCCGGAAGTGAGGATTGATAGCCTCGCCATCATATCTCCTGGAAGACCCGACATTGTTCTCTTGGTTCCTGAGAATGGAAATCCAAAGGGCATGTGGTTTACTTTGAAAGAAGGGAGCAAGTACAACTTGAAATTCACTTTTCATGTTAACAACAACATTGTCTCTGGTCTTAGGTACACCAATACAGTTTGGAAGACCGGTGTCAAAGTGGACAGAGCTAAGGAAATGCTTGGAACCTTTAGTCCTCAGTTGGAGCCATACAACCACGTGATGCCAGAAGAGACCACTCCTTCTGGCATGTTTGCTCGAGGATCATATTCTGCAAGAACTAAGTTTCTTGATGATGATAATAAGTGCTACTTGGAGATCAACTACAGCTTTGACATCCGTAAAGAATGGCCTGCGCTTTGA

Protein Analysis

240

Amino Acids

27.23

Weight (kDa)

4.73

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rho_GDI PF02115 52 - 236 6.8e-87 RHO protein GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 124
AccIII TCCGGA 1 cut(s) 313
AclWI GGATC 2 cut(s) 305, 631
AcsI RAATTY 1 cut(s) 443
AcvI CACGTG 1 cut(s) 580
AfaI GTAC 3 cut(s) 203, 434, 488
AfiI CCNNNNNNNGG 1 cut(s) 386
AgeI ACCGGT 1 cut(s) 509
AgsI TTSAA 2 cut(s) 418, 442
AjnI CCWGG 2 cut(s) 20, 349
AloI GAACNNNNNNTCC 6 cut(s) 17, 49, 74, 106, 538, 570
AluBI AGCT 3 cut(s) 268, 530, 690
AluI AGCT 3 cut(s) 268, 530, 690
Alw26I GTCTC 3 cut(s) 296, 478, 587
AlwI GGATC 2 cut(s) 305, 631
Ama87I CYCGRG 2 cut(s) 221, 618
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 1 cut(s) 710
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AsiGI ACCGGT 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 2 cut(s) 221, 618
AvaII GGWCC 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 580
BbsI GAAGAC 3 cut(s) 174, 361, 512
BccI CCATC 2 cut(s) 62, 347
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 2 cut(s) 22, 351
BcoDI GTCTC 3 cut(s) 296, 478, 587
BfmI CTRYAG 1 cut(s) 685
Bme1390I CCNGG 2 cut(s) 22, 351
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 2 cut(s) 221, 618
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 5 cut(s) 19, 195, 378, 547, 567
BmrFI CCNGG 2 cut(s) 22, 351
BmsI GCATC 2 cut(s) 103, 573
BoxI GACNNNNGTC 1 cut(s) 512
BpiI GAAGAC 3 cut(s) 174, 361, 512
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpmI CTGGAG 2 cut(s) 36, 76
Bpu10I CCTNAGC 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 2 cut(s) 21, 156
BsaWI WCCGGW 2 cut(s) 313, 509
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse118I RCCGGY 1 cut(s) 509
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 2 cut(s) 22, 351
BseDI CCNNGG 2 cut(s) 21, 156
BseGI GGATG 3 cut(s) 73, 241, 696
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 4 cut(s) 212, 239, 372, 572
BseRI GAGGAG 3 cut(s) 76, 79, 173
BshFI GGCC 1 cut(s) 712
BshTI ACCGGT 1 cut(s) 509
BsiHKCI CYCGRG 2 cut(s) 221, 618
BsiSI CCGG 2 cut(s) 314, 510
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 296, 478, 587
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 712
Bso31I GGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 221, 618
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 3 cut(s) 310, 623, 678
BspANI GGCC 1 cut(s) 712
BspCNI CTCAG 4 cut(s) 211, 240, 373, 571
BspEI TCCGGA 1 cut(s) 313
BspLI GGNNCC 5 cut(s) 19, 195, 378, 547, 567
BspPI GGATC 2 cut(s) 305, 631
BspTNI GGTCTC 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 21, 156
BssMI GATC 3 cut(s) 310, 623, 678
Bst2UI CCWGG 2 cut(s) 22, 351
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 8 cut(s) 119, 198, 248, 381, 482, 531, 558, 642
BstF5I GGATG 3 cut(s) 73, 241, 696
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 3 cut(s) 313, 626, 681
BstMAI GTCTC 3 cut(s) 296, 478, 587
BstMBI GATC 3 cut(s) 310, 623, 678
BstNI CCWGG 2 cut(s) 22, 351
BstNSI RCATGY 2 cut(s) 406, 613
BstPAI GACNNNNGTC 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 20, 349
BstSFI CTRYAG 1 cut(s) 685
BstV2I GAAGAC 3 cut(s) 174, 361, 512
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 1 cut(s) 712
BtsCI GGATG 3 cut(s) 73, 241, 696
Cac8I GCNNGC 1 cut(s) 714
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 3 cut(s) 202, 433, 487
CspAI ACCGGT 1 cut(s) 509
CviAII CATG 4 cut(s) 28, 403, 455, 610
CviJI RGCY 8 cut(s) 20, 104, 268, 333, 530, 568, 690, 712
CviKI_1 RGCY 8 cut(s) 20, 104, 268, 333, 530, 568, 690, 712
CviQI GTAC 3 cut(s) 202, 433, 487
DdeI CTNAG 8 cut(s) 119, 198, 248, 381, 482, 531, 558, 642
DpnI GATC 3 cut(s) 312, 625, 680
DpnII GATC 3 cut(s) 310, 623, 678
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 580
Eco88I CYCGRG 2 cut(s) 221, 618
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 20, 349
FaeI CATG 4 cut(s) 31, 406, 458, 613
FaiI YATR 7 cut(s) 29, 344, 404, 456, 571, 611, 628
FalI AAGNNNNNCTT 4 cut(s) 422, 454, 656, 688
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 27, 402, 454, 609
FblI GTMKAC 1 cut(s) 124
FokI GGATG 3 cut(s) 80, 248, 683
GlaI GCGC 1 cut(s) 717
GsuI CTGGAG 2 cut(s) 36, 76
HaeIII GGCC 1 cut(s) 712
HapII CCGG 2 cut(s) 314, 510
HhaI GCGC 1 cut(s) 718
Hin1II CATG 4 cut(s) 31, 406, 458, 613
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 2 cut(s) 125, 460
HindII GTYRAC 2 cut(s) 125, 460
HinfI GANTC 4 cut(s) 137, 176, 244, 304
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 2 cut(s) 314, 510
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 6 cut(s) 125, 204, 411, 460, 489, 523
Hpy188I TCNGA 2 cut(s) 249, 275
Hpy188III TCNNGA 8 cut(s) 15, 93, 221, 223, 308, 314, 380, 650
Hpy8I GTNNAC 6 cut(s) 125, 204, 411, 460, 489, 523
Hpy99I CGWCG 4 cut(s) 41, 110, 113, 176
HpyAV CCTTC 4 cut(s) 220, 253, 416, 612
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 2 cut(s) 187, 635
HpyF3I CTNAG 8 cut(s) 119, 198, 248, 381, 482, 531, 558, 642
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 4 cut(s) 31, 406, 458, 613
HspAI GCGC 1 cut(s) 716
Kpn2I TCCGGA 1 cut(s) 313
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 310, 623, 678
LmnI GCTCC 3 cut(s) 17, 426, 565
LweI GCATC 2 cut(s) 103, 573
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 312, 625, 680
MboI GATC 3 cut(s) 310, 623, 678
MboII GAAGA 6 cut(s) 132, 176, 179, 366, 517, 602
MfeI CAATTG 1 cut(s) 188
MluCI AATT 3 cut(s) 182, 188, 443
MlyI GAGTC 2 cut(s) 253, 298
MmeI TCCRAC 1 cut(s) 543
MroI TCCGGA 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 459
MspI CCGG 2 cut(s) 314, 510
MspR9I CCNGG 2 cut(s) 22, 351
MunI CAATTG 1 cut(s) 188
MvaI CCWGG 2 cut(s) 22, 351
NdeII GATC 3 cut(s) 310, 623, 678
NlaIII CATG 4 cut(s) 31, 406, 458, 613
NlaIV GGNNCC 5 cut(s) 19, 195, 378, 547, 567
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 2 cut(s) 406, 613
PaeR7I CTCGAG 2 cut(s) 221, 618
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 137, 176
PfoI TCCNGGA 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 509
PleI GAGTC 2 cut(s) 252, 298
PmaCI CACGTG 1 cut(s) 580
PmlI CACGTG 1 cut(s) 580
PpsI GAGTC 2 cut(s) 252, 298
Ppu21I YACGTR 1 cut(s) 580
PpuMI RGGWCCY 1 cut(s) 194
PshAI GACNNNNGTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 20, 349
PspCI CACGTG 1 cut(s) 580
PspGI CCWGG 2 cut(s) 20, 349
PspN4I GGNNCC 5 cut(s) 19, 195, 378, 547, 567
PspPI GGNCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 194
PspXI VCTCGAGB 1 cut(s) 618
RsaI GTAC 3 cut(s) 203, 434, 488
RsaNI GTAC 3 cut(s) 202, 433, 487
SalI GTCGAC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 459
Sau3AI GATC 3 cut(s) 310, 623, 678
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 253, 298
ScrFI CCNGG 2 cut(s) 22, 351
SetI ASST 6 cut(s) 270, 488, 532, 551, 582, 692
SfaNI GCATC 2 cut(s) 103, 573
SfcI CTRYAG 1 cut(s) 685
Sfr274I CTCGAG 2 cut(s) 221, 618
SinI GGWCC 1 cut(s) 194
SlaI CTCGAG 2 cut(s) 221, 618
SmlI CTYRAG 2 cut(s) 221, 618
SmoI CTYRAG 2 cut(s) 221, 618
Sse9I AATT 3 cut(s) 182, 188, 443
StyD4I CCNGG 2 cut(s) 20, 349
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 1 cut(s) 582
TaqI TCGA 4 cut(s) 36, 124, 222, 619
TasI AATT 3 cut(s) 182, 188, 443
TatI WGTACW 2 cut(s) 201, 432
TfiI GAWTC 2 cut(s) 137, 176
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 406, 613
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 402
XhoI CTCGAG 2 cut(s) 221, 618
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.