Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

791860 .. 792933

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTGCTGCATTCAGGTAGAACAGATGCAAGTTTTATTTTTGCTGATGGAAGAAGTTCGTGCTTTTGTGTTTCTGCAGAATCTCTCGAACCAGAGGTTAAGATCCTGAGCCTTGCAATTAAATCGCCTGAAAGATCTGATATATTTCTTCCTATTCCGGAGGACGGAAAGCCTAACGGCTTGTGGTTCACTTTGAAAGAAGGTAGCAAATACAGCCTTGAATTTACGTTCCAGGTCAGCAATAACATTGTTTCAGGTCTCAAATACACCAACACAGTCTGGAAAACTGCTGTGAAGGTTGATAGCACAAAAGAGATGCTTGGAACCTTTAGTCCACAGTTGGAGCCTTATACACATGTTTTGCCCGAGGACACAACCCCATCTGGTATGTTTGCTAGGGGAGCTTATTCAGCTAGAAGCAAGTTTCTTGATGATGACAACACATGCTACTTGGAGATCAATTACACCTTTGATATTAGGAAAGACTGGGCAGCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

166

Amino Acids

18.57

Weight (kDa)

5.05

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	26 - 162	1.6e-62	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	157
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	196, 221
AjnI	CCWGG	1 cut(s)	231
AloI	GAACNNNNNNTCC	2 cut(s)	316, 348
AluBI	AGCT	2 cut(s)	404, 413
AluI	AGCT	2 cut(s)	404, 413
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	157
ApeKI	GCWGC	4 cut(s)	4, 7, 491, 494
ApoI	RAATTY	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	365
BccI	CCATC	2 cut(s)	41, 388
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	396, 414
BfmI	CTRYAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	4 cut(s)	5, 8, 492, 495
BlsI	GCNGC	4 cut(s)	6, 9, 493, 496
Bme1390I	CCNGG	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	325, 345
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	2 cut(s)	16, 306
BmuI	ACTGGG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	102, 134, 456
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	325, 345
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	102, 134, 456
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	277, 339
BstDEI	CTNAG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	105, 137, 459
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	102, 134, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 401, 410
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	359, 447
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	102, 134
BstYI	RGATCY	2 cut(s)	102, 134
CviAII	CATG	2 cut(s)	356, 444
CviJI	RGCY	7 cut(s)	111, 172, 180, 216, 346, 404, 413
CviKI_1	RGCY	7 cut(s)	111, 172, 180, 216, 346, 404, 413
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	104, 136, 458
DpnII	GATC	3 cut(s)	102, 134, 456
Eco31I	GGTCTC	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	359, 447
FaiI	YATR	5 cut(s)	143, 351, 357, 389, 445
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	2 cut(s)	355, 443
Fnu4HI	GCNGC	4 cut(s)	5, 8, 492, 495
Fsp4HI	GCNGC	4 cut(s)	5, 8, 492, 495
FspBI	CTAG	2 cut(s)	396, 414
GluI	GCNGC	4 cut(s)	5, 8, 492, 495
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	359, 447
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	189, 335
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	5 cut(s)	86, 106, 158, 280, 428
Hpy8I	GTNNAC	2 cut(s)	189, 335
HpyAV	CCTTC	2 cut(s)	194, 289
HpyCH4III	ACNGT	2 cut(s)	277, 339
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	10, 29, 77, 116
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 401, 410
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	359, 447
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	102, 134, 456
LmnI	GCTCC	2 cut(s)	343, 401
LweI	GCATC	2 cut(s)	16, 306
MaeI	CTAG	2 cut(s)	396, 414
MaeII	ACGT	1 cut(s)	227
MalI	GATC	3 cut(s)	104, 136, 458
MboI	GATC	3 cut(s)	102, 134, 456
MboII	GAAGA	2 cut(s)	63, 140
MflI	RGATCY	2 cut(s)	102, 134
MluCI	AATT	3 cut(s)	117, 221, 460
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	3 cut(s)	88, 154, 361
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	2 cut(s)	99, 120
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	213, 401, 410
NdeII	GATC	3 cut(s)	102, 134, 456
NlaIII	CATG	2 cut(s)	359, 447
NlaIV	GGNNCC	2 cut(s)	325, 345
NspI	RCATGY	2 cut(s)	359, 447
PciI	ACATGT	1 cut(s)	355
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	6, 9, 493, 496
PscI	ACATGT	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	325, 345
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	102, 134
SaqAI	TTAA	2 cut(s)	99, 120
SatI	GCNGC	4 cut(s)	5, 8, 492, 495
Sau3AI	GATC	3 cut(s)	102, 134, 456
ScrFI	CCNGG	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	16, 306
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	117, 221, 460
SspMI	CTAG	2 cut(s)	396, 414
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	277, 339
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	117, 221, 460
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	99, 120
Tru9I	TTAA	2 cut(s)	99, 120
TseI	GCWGC	4 cut(s)	4, 7, 491, 494
TspGWI	ACGGA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	2 cut(s)	359, 447
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	2 cut(s)	396, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.