Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

514055 .. 515926

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTCTTTGGCTGTTGGAGTGAATTCAAGTTCCAAAAACATGGGTTTGGATGATGAGACTGGCGCTGAAGTTTCAGAAGCAAAGACAGCTAAAACGGCTACTGACGTGGATCAATCATCCACAGGGTTGGTTAGAGAACCGAGTGAGAGTTCCATGTACGTAACTGAGGATGATGATGACGATGATGAAGTAAAGAAAATTGAGTTGGGTCCTCAGTGCACTCTCAAAGAACACATTGAGAAGGATAAGGACGATGAGAGCTTAAGGAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATGTTAATTCTGTTGGAGAAACTCTAGAACCAGATGTTAAGATCCTGAGCCTTGCAATTAAATCCCCTGATAGATCTGACATAGTTCTTCCTATTCCTGAGAATGGAAATCCCAAGGGCTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGCCTTCAGTTCACTTTCCAGGTCAGCAATAACATTGTTTCAGGTCTCAAATACACTAACGCAGTCTGGAAAACTGCTGTAAAAGTTGATAGCACAAAAGAGATGCTCGGAACCTTTAGCCCACAGTCAGAGCCTTACACACATGTGTTGCCTGAGGACACAACCCCATCTGGCATATTTGCAAGGGGATCTTATTCAGCTAGAAGCAAGTTTGTTGATGATGACAACAAGTGCTACTTGGAGATCAATTACACCTTTGACATTCGGAAAGACTGGCAATCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

246

Amino Acids

27.24

Weight (kDa)

4.58

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	117, 334, 646
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	87, 440
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	27, 433
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 270, 302
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	89, 261, 283, 650
AluI	AGCT	4 cut(s)	89, 261, 283, 650
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	50, 500
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	117, 334, 646
ApaLI	GTGCAC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	1 cut(s)	625
BceAI	ACGGC	2 cut(s)	111, 429
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	50, 500
BfaI	CTAG	2 cut(s)	323, 651
BfoI	RGCGCY	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	262
BglII	AGATCT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	210, 562
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	344
BsaAI	YACGTR	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	64, 728
Bse21I	CCTNAGG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	55, 116, 175, 304
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMII	CTCAG	5 cut(s)	156, 227, 335, 387, 594
BseNI	ACTGG	2 cut(s)	64, 728
BseSI	GKGCMC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	50, 500
Bso31I	GGTCTC	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	109, 339, 371, 638, 693
BspCNI	CTCAG	5 cut(s)	157, 226, 336, 388, 595
BspLI	GGNNCC	2 cut(s)	210, 562
BspPI	GGATC	3 cut(s)	117, 334, 646
BspTI	CTTAAG	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	64, 728
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	109, 339, 371, 638, 693
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	165, 213, 344, 396, 603
BstF5I	GGATG	4 cut(s)	55, 116, 175, 304
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	5 cut(s)	112, 342, 374, 641, 696
BstMAI	GTCTC	2 cut(s)	50, 500
BstMBI	GATC	5 cut(s)	109, 339, 371, 638, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 450
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	221
BstSNI	TACGTA	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	339, 371, 638
BstXI	CCANNNNNNTGG	2 cut(s)	40, 127
BstYI	RGATCY	3 cut(s)	339, 371, 638
Bsu36I	CCTNAGG	1 cut(s)	603
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	55, 116, 175, 304
BtsIMutI	CAGTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	40, 154, 593
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	5 cut(s)	165, 213, 344, 396, 603
DpnI	GATC	5 cut(s)	111, 341, 373, 640, 695
DpnII	GATC	5 cut(s)	109, 339, 371, 638, 693
Eco105I	TACGTA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	87, 440
Eco81I	CCTNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	3 cut(s)	43, 157, 596
FaiI	YATR	5 cut(s)	41, 155, 380, 594, 626
FalI	AAGNNNNNCTT	4 cut(s)	625, 657, 671, 703
FatI	CATG	3 cut(s)	39, 153, 592
FokI	GGATG	4 cut(s)	62, 103, 182, 311
FspBI	CTAG	2 cut(s)	323, 651
GlaI	GCGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	66
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	43, 157, 596
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
Hpy166II	GTNNAC	3 cut(s)	219, 426, 462
Hpy188I	TCNGA	5 cut(s)	76, 376, 560, 580, 717
Hpy188III	TCNNGA	4 cut(s)	323, 343, 395, 517
Hpy8I	GTNNAC	3 cut(s)	219, 426, 462
HpyAV	CCTTC	4 cut(s)	235, 268, 431, 464
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	2 cut(s)	105, 159
HpyCH4V	TGCA	3 cut(s)	219, 353, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 450
HpyF3I	CTNAG	5 cut(s)	165, 213, 344, 396, 603
HpySE526I	ACGT	2 cut(s)	105, 159
Hsp92II	CATG	3 cut(s)	43, 157, 596
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	109, 339, 371, 638, 693
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	2 cut(s)	323, 651
MaeII	ACGT	2 cut(s)	105, 159
MaeIII	GTNAC	2 cut(s)	160, 446
MalI	GATC	5 cut(s)	111, 341, 373, 640, 695
MboI	GATC	5 cut(s)	109, 339, 371, 638, 693
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	3 cut(s)	339, 371, 638
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	22, 198, 304, 354, 697
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	160, 222, 261, 598
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	4 cut(s)	263, 303, 336, 357
MslI	CAYNNNNRTG	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 450
NdeII	GATC	5 cut(s)	109, 339, 371, 638, 693
NlaIII	CATG	3 cut(s)	43, 157, 596
NlaIV	GGNNCC	2 cut(s)	210, 562
NspI	RCATGY	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	593
PciI	ACATGT	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	209
PscI	ACATGT	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	210, 562
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	339, 371, 638
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	4 cut(s)	263, 303, 336, 357
Sau3AI	GATC	5 cut(s)	109, 339, 371, 638, 693
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	160
Sse9I	AATT	5 cut(s)	22, 198, 304, 354, 697
SspMI	CTAG	2 cut(s)	323, 651
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	2 cut(s)	108, 162
TasI	AATT	5 cut(s)	22, 198, 304, 354, 697
Tru1I	TTAA	4 cut(s)	263, 303, 336, 357
Tru9I	TTAA	4 cut(s)	263, 303, 336, 357
TscAI	CASTG	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	323, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.