Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

485330 .. 488270

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTGATGGAAAAGACGAGAAAAAAGAGGGTGGTGAAGTCTCAGAGAAGAACAAGTGTGAGCCTAGTGCAGGGCGGATGGTTAGACCACCCAGTGACAGTTCCTTGTGTGTGACAGAGGATGAGGAGGATGATGACGATGATGATGAGCTAGCAAAGAAAATAGCGTTGGGCCCTCAGTGCACTCTCAAAGAACACATCCAGAAAGATGCGGATGATGAGAGCTTAAGGAGGTGGAAAGAACAGCTTCTTGGGGCTGTTGATGTCAATGCTGTTGGAGAATCTCTAGAACCAGAGGTTAAGATCCTGAGCCTTGCAATTAAATCGCCTGATAGATCTGATATATTTCTTCCAATTCCGGAGGATGGAAAGCCCAAGGGCTTGTGGTTCACTTTAAAAGAAGGTAGCAAATACAGCCTTGAGTTCACGTTCCAGGTCAGCAATAACATTGTTTCAGGTTTCAAATACACCAACACAGTCTGGAAAACTGCTGTGAAGGTTGATAGCACAAAAGAGATGCTTGGAACCTTTAGTCCACAGTTGGAGCCTTATACACATGTTTTGCCCGAGGACACAACCCCATCTGGTATGTTTGCCAGGGGAACTTATTCAGCTAGAAGCAAGTTTCTTGATGATGACAACACATGCTACTTGGAGATCAATTACACCTTTGATATTAGGAAAGACTGGGCAGCAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

4.62

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	41 - 229	2.6e-84	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	2 cut(s)	76, 212
AclWI	GGATC	1 cut(s)	298
AdeI	CACNNNGTG	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	71, 365
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	432, 596
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 234, 266
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	4 cut(s)	151, 225, 247, 614
AluI	AGCT	4 cut(s)	151, 225, 247, 614
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	1 cut(s)	172
ApaI	GGGCCC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	692, 695
Asp700I	GAANNNNTTC	2 cut(s)	246, 607
AspS9I	GGNCC	2 cut(s)	172, 173
AsuHPI	GGTGA	2 cut(s)	17, 47
AsuNHI	GCTAGC	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	176, 185
BanII	GRGCYC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	185
BccI	CCATC	4 cut(s)	2, 73, 359, 589
BcgI	CGANNNNNNTGC	2 cut(s)	306, 340
BciT130I	CCWGG	2 cut(s)	434, 598
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	4 cut(s)	66, 152, 287, 615
BfrI	CTTAAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	693, 696
BlsI	GCNGC	2 cut(s)	694, 697
Bme1390I	CCNGG	2 cut(s)	434, 598
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	172, 173
BmiI	GGNNCC	3 cut(s)	174, 526, 546
BmrFI	CCNGG	2 cut(s)	434, 598
BmrI	ACTGGG	2 cut(s)	87, 697
BmsI	GCATC	2 cut(s)	199, 507
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	2 cut(s)	87, 697
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	375, 567, 597
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 365
Bse1I	ACTGG	2 cut(s)	93, 692
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	434, 598
BseDI	CCNNGG	3 cut(s)	375, 567, 597
BseGI	GGATG	6 cut(s)	84, 127, 136, 198, 220, 370
BseLI	CCNNNNNNNGG	2 cut(s)	71, 365
BseMII	CTCAG	3 cut(s)	57, 191, 299
BseNI	ACTGG	2 cut(s)	93, 692
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	176, 185
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	71, 365
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	566
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	176, 185
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	303, 335, 657
BspACI	CCGC	2 cut(s)	76, 212
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	3 cut(s)	56, 190, 300
BspEI	TCCGGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	174, 526, 546
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	93, 692
BssECI	CCNNGG	3 cut(s)	375, 567, 597
BssMI	GATC	3 cut(s)	303, 335, 657
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	434, 598
Bst4CI	ACNGT	3 cut(s)	101, 478, 540
BstAFI	CTTAAG	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	43, 177, 308
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	6 cut(s)	84, 127, 136, 198, 220, 370
BstKTI	GATC	3 cut(s)	306, 338, 660
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	303, 335, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 414
BstNI	CCWGG	2 cut(s)	434, 598
BstNSI	RCATGY	2 cut(s)	560, 648
BstSCI	CCNGG	2 cut(s)	432, 596
BstSLI	GKGCMC	2 cut(s)	176, 185
BstX2I	RGATCY	2 cut(s)	303, 335
BstYI	RGATCY	2 cut(s)	303, 335
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	6 cut(s)	84, 127, 136, 198, 220, 370
BtsIMutI	CAGTG	2 cut(s)	100, 185
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	172, 173
CviAII	CATG	2 cut(s)	557, 645
DdeI	CTNAG	3 cut(s)	43, 177, 308
DpnI	GATC	3 cut(s)	305, 337, 659
DpnII	GATC	3 cut(s)	303, 335, 657
DraI	TTTAAA	1 cut(s)	396
DraIII	CACNNNGTG	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	432, 596
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	560, 648
FaiI	YATR	5 cut(s)	344, 552, 558, 590, 646
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 504, 536
FatI	CATG	2 cut(s)	556, 644
Fnu4HI	GCNGC	2 cut(s)	693, 696
FokI	GGATG	6 cut(s)	91, 134, 143, 185, 227, 377
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	693, 696
FspBI	CTAG	4 cut(s)	66, 152, 287, 615
GluI	GCNGC	2 cut(s)	693, 696
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	560, 648
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	17, 47
Hpy166II	GTNNAC	4 cut(s)	183, 390, 426, 536
Hpy188I	TCNGA	2 cut(s)	46, 340
Hpy188III	TCNNGA	6 cut(s)	202, 287, 307, 359, 481, 629
Hpy8I	GTNNAC	4 cut(s)	183, 390, 426, 536
HpyAV	CCTTC	2 cut(s)	395, 490
HpyCH4III	ACNGT	3 cut(s)	101, 478, 540
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	3 cut(s)	71, 183, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 414
HpyF3I	CTNAG	3 cut(s)	43, 177, 308
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	560, 648
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	303, 335, 657
LmnI	GCTCC	1 cut(s)	544
LweI	GCATC	2 cut(s)	199, 507
MaeI	CTAG	4 cut(s)	66, 152, 287, 615
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	95, 112
MalI	GATC	3 cut(s)	305, 337, 659
MboI	GATC	3 cut(s)	303, 335, 657
MboII	GAAGA	2 cut(s)	61, 341
MflI	RGATCY	2 cut(s)	303, 335
MhlI	GDGCHC	2 cut(s)	176, 185
MluCI	AATT	3 cut(s)	318, 354, 661
MmeI	TCCRAC	2 cut(s)	256, 522
MnlI	CCTC	9 cut(s)	22, 112, 118, 121, 186, 225, 289, 355, 562
MroI	TCCGGA	1 cut(s)	358
MroXI	GAANNNNTTC	2 cut(s)	246, 607
MseI	TTAA	4 cut(s)	227, 300, 321, 395
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	434, 598
MvaI	CCWGG	2 cut(s)	434, 598
MwoI	GCNNNNNNNGC	2 cut(s)	180, 414
NdeII	GATC	3 cut(s)	303, 335, 657
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	560, 648
NlaIV	GGNNCC	3 cut(s)	174, 526, 546
NmuCI	GTSAC	2 cut(s)	95, 112
NspI	RCATGY	2 cut(s)	560, 648
PciI	ACATGT	1 cut(s)	556
PdmI	GAANNNNTTC	2 cut(s)	246, 607
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	694, 697
PscI	ACATGT	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	432, 596
PspGI	CCWGG	2 cut(s)	432, 596
PspN4I	GGNNCC	3 cut(s)	174, 526, 546
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	172, 173
PsuI	RGATCY	2 cut(s)	303, 335
SaqAI	TTAA	4 cut(s)	227, 300, 321, 395
SatI	GCNGC	2 cut(s)	693, 696
Sau3AI	GATC	3 cut(s)	303, 335, 657
Sau96I	GGNCC	2 cut(s)	172, 173
ScrFI	CCNGG	2 cut(s)	434, 598
SduI	GDGCHC	2 cut(s)	176, 185
SfaNI	GCATC	2 cut(s)	199, 507
SmlI	CTYRAG	2 cut(s)	226, 419
SmoI	CTYRAG	2 cut(s)	226, 419
Sse9I	AATT	3 cut(s)	318, 354, 661
SsiI	CCGC	2 cut(s)	76, 212
SspMI	CTAG	4 cut(s)	66, 152, 287, 615
StyD4I	CCNGG	2 cut(s)	432, 596
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	101, 478, 540
TaiI	ACGT	1 cut(s)	431
TasI	AATT	3 cut(s)	318, 354, 661
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	4 cut(s)	227, 300, 321, 395
Tru9I	TTAA	4 cut(s)	227, 300, 321, 395
TscAI	CASTG	2 cut(s)	100, 185
TseFI	GTSAC	2 cut(s)	95, 112
TseI	GCWGC	2 cut(s)	692, 695
Tsp45I	GTSAC	2 cut(s)	95, 112
TspRI	CASTG	2 cut(s)	100, 185
Vha464I	CTTAAG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	181
XagI	CCTNNNNNAGG	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	2 cut(s)	560, 648
XmnI	GAANNNNTTC	2 cut(s)	246, 607
XspI	CTAG	4 cut(s)	66, 152, 287, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.