Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Reverse (-)

31794393 .. 31796150

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCTCTGGCCGTTGGAGTTGTTTCGAGTTCCAAAAACATGGGGCTGGATGATGAAAACACCGCCGAGGTCTCCGACAAGATGGCGAAAACTGGTGGGGCAAGTGCGGATCAACCGTCCACAGGGTTGGTTAGAGAACCCAGCGAGGGTTCCCTCTATCAGACCGAGGACGAGGACGACGATGACGAAGTAAAGAAGATTGAGTTGGGGCCTCAGTGCACTCTCAAAGAACAAATTGAGAAGGACGCGGTTCAAACTCTAGAACCAGATGTTAAGATCATGAGCCTTGCAATTAAATCCCCTGGCAGATCTGATATAATTCTTCCGATTCCTGAGAACGGAAATCCCAAAGGGTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGCCTCGAATTCACTATTCAGGTCAGCAATAACATTGTTTCAGGTCTCAAATACACTAACACAGTCTGGAAAACTGCTGTGAAAGTTGATAGCACAAAAGAGATGCTTGGAACATTTAGTCCACAGTCAGAGCCTTACACACATGTGTTGCCTGAGGACACAACCCCCTCGGGCATATTTGCTAGGGGATCTTATTCAGCTCGAAGCAAGTTTGTTGACGATGACAACAAGTGCTACTTGGAGATCAATTACACCTTTGATATCCGAAAAGACTGGCAATCGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

225

Amino Acids

24.68

Weight (kDa)

4.58

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	3 cut(s)	63, 107, 248
AclWI	GGATC	2 cut(s)	117, 583
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	122, 146, 338
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	254, 370
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AleI	CACNNNNGTG	1 cut(s)	530
AloI	GAACNNNNNNTCC	2 cut(s)	490, 522
AluBI	AGCT	1 cut(s)	587
AluI	AGCT	1 cut(s)	587
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	9, 76, 437
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	117, 583
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	2 cut(s)	9, 209
ApaLI	GTGCAC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	556
AxyI	CCTNAGG	1 cut(s)	540
BaeGI	GKGCMC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	3 cut(s)	9, 76, 437
BfaI	CTAG	2 cut(s)	260, 570
BglII	AGATCT	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	151, 210
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	76, 437
BsaJI	CCNNGG	4 cut(s)	66, 165, 301, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 146, 338
Bse1I	ACTGG	2 cut(s)	97, 665
Bse21I	CCTNAGG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	66, 165, 301, 555
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	3 cut(s)	122, 146, 338
BseMII	CTCAG	3 cut(s)	227, 324, 531
BseNI	ACTGG	2 cut(s)	97, 665
BseSI	GKGCMC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	11, 211
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	556
BslI	CCNNNNNNNGG	3 cut(s)	122, 146, 338
BsmAI	GTCTC	3 cut(s)	9, 76, 437
BsnI	GGCC	2 cut(s)	11, 211
Bso31I	GGTCTC	2 cut(s)	76, 437
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	109, 276, 308, 575, 630
BspACI	CCGC	3 cut(s)	63, 107, 248
BspANI	GGCC	2 cut(s)	11, 211
BspCNI	CTCAG	3 cut(s)	226, 325, 532
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	151, 210
BspPI	GGATC	2 cut(s)	117, 583
BspTNI	GGTCTC	2 cut(s)	76, 437
BsrI	ACTGG	2 cut(s)	97, 665
BssECI	CCNNGG	4 cut(s)	66, 165, 301, 555
BssMI	GATC	5 cut(s)	109, 276, 308, 575, 630
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	117, 451, 513
BstDEI	CTNAG	3 cut(s)	213, 333, 540
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	5 cut(s)	112, 279, 311, 578, 633
BstMAI	GTCTC	3 cut(s)	9, 76, 437
BstMBI	GATC	5 cut(s)	109, 276, 308, 575, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	308, 575
BstXI	CCANNNNNNTGG	2 cut(s)	40, 127
BstYI	RGATCY	2 cut(s)	308, 575
Bsu36I	CCTNAGG	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	11, 211
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	254
CviAII	CATG	3 cut(s)	40, 280, 530
CviJI	RGCY	8 cut(s)	11, 46, 211, 285, 381, 390, 520, 587
CviKI_1	RGCY	8 cut(s)	11, 46, 211, 285, 381, 390, 520, 587
DdeI	CTNAG	3 cut(s)	213, 333, 540
DpnI	GATC	5 cut(s)	111, 278, 310, 577, 632
DpnII	GATC	5 cut(s)	109, 276, 308, 575, 630
EaeI	YGGCCR	1 cut(s)	9
Eco31I	GGTCTC	2 cut(s)	76, 437
Eco32I	GATATC	1 cut(s)	649
Eco81I	CCTNAGG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	649
FaeI	CATG	3 cut(s)	43, 283, 533
FaiI	YATR	5 cut(s)	41, 281, 317, 531, 563
FalI	AAGNNNNNCTT	4 cut(s)	477, 509, 608, 640
FatI	CATG	3 cut(s)	39, 279, 529
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	2 cut(s)	260, 570
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	11, 211
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	43, 283, 533
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	1 cut(s)	328
Hpy166II	GTNNAC	5 cut(s)	120, 219, 363, 509, 604
Hpy188I	TCNGA	6 cut(s)	76, 162, 313, 327, 517, 653
Hpy188III	TCNNGA	4 cut(s)	260, 280, 332, 454
Hpy8I	GTNNAC	5 cut(s)	120, 219, 363, 509, 604
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	235, 368
HpyCH4III	ACNGT	3 cut(s)	117, 451, 513
HpyCH4V	TGCA	2 cut(s)	219, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	3 cut(s)	213, 333, 540
Hsp92II	CATG	3 cut(s)	43, 283, 533
Kzo9I	GATC	5 cut(s)	109, 276, 308, 575, 630
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	260, 570
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	5 cut(s)	111, 278, 310, 577, 632
MboI	GATC	5 cut(s)	109, 276, 308, 575, 630
MboII	GAAGA	2 cut(s)	208, 314
MflI	RGATCY	2 cut(s)	308, 575
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	234, 291, 318, 395, 634
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	61, 139, 160, 164, 166, 222, 401, 535, 565
MseI	TTAA	2 cut(s)	273, 294
MslI	CAYNNNNRTG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	5 cut(s)	109, 276, 308, 575, 630
NlaIII	CATG	3 cut(s)	43, 283, 533
NlaIV	GGNNCC	2 cut(s)	151, 210
NmeAIII	GCCGAG	1 cut(s)	91
NspI	RCATGY	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	1 cut(s)	279
PciI	ACATGT	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 183
PfeI	GAWTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	151, 210
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	308, 575
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	273, 294
Sau3AI	GATC	5 cut(s)	109, 276, 308, 575, 630
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	6 cut(s)	72, 379, 411, 433, 589, 644
SfaNI	GCATC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	234, 291, 318, 395, 634
SsiI	CCGC	3 cut(s)	63, 107, 248
SspMI	CTAG	2 cut(s)	260, 570
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	117, 451, 513
TaqI	TCGA	3 cut(s)	26, 393, 589
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	234, 291, 318, 395, 634
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	273, 294
Tru9I	TTAA	2 cut(s)	273, 294
TscAI	CASTG	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	395
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	2 cut(s)	260, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.