Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Reverse (-)

28834587 .. 28836156

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCTCTGGCCGTTGGACTTGTTTCGAGTTCCAAAAACATGGGGTTGGATGATGATAACGCCGCCAAGGTTTCCGACAAGACAGCGAAAACCGGTGAGGCAAGTGCGGATCAACTATCCACAGGGATGGTTAGATCACCCAGTGAGGGTTCTCTCTGTCAGACCGAGGACGAAGACGACGATGACGAACTAAAGAAGATTGAGTTGGGGCCTCAGTTCACTCTCAAAGAACAAATTGAGAAGGATGCGGACGATGAGAGCTTGAGGAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATGTTAATTCTGTTGGAGAAACTCTAGAGCCAGAAGTTAAGATCATGAGCCTGGCAATTAAATCCCCTGGCAGATCTGATATAATTCTTCCGATTCCTGTCGACGGAAATCCCAAAGGGTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGCCTCAAATTCACTTTTCAGGTCAGCAATAACATCGTTTCAGGTCTCAAATACACCAACACGGTCTGGAAAACTGCTGTGAAAGGGAGTTTCGATGTTTCATTCTCGCGGATCATTTTCTTCGCAGTTGATAGCACGAAAGAGATGCTTGGAACATTTAGTCCACAGTCAGATCCTTACACACATGTGTTGCCCGAGGACACAACCCCATCTGGCATATTTGCTAGGGGATCTTATTCAGCTCGAAGCAAGTTTGCTGACGATGACAACAAGTGCTACTTGGAGATTAATTACACCTTTGATATCCGAAAAGACTGGCAATCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

260

Amino Acids

28.63

Weight (kDa)

4.68

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	55 - 255	1.4e-79	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	559
AciI	CCGC	4 cut(s)	63, 107, 248, 559
AclWI	GGATC	4 cut(s)	117, 569, 617, 688
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	458
AdeI	CACNNNGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	146, 401
AflIII	ACRYGT	1 cut(s)	634
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	348, 364
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 270, 302
AleI	CACNNNNGTG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	595, 627
AluBI	AGCT	3 cut(s)	261, 283, 692
AluI	AGCT	3 cut(s)	261, 283, 692
Alw26I	GTCTC	2 cut(s)	9, 500
AlwI	GGATC	4 cut(s)	117, 569, 617, 688
Ama87I	CYCGRG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	9, 209
ApoI	RAATTY	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	738
AsiGI	ACCGGT	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	107, 129
AvaI	CYCGRG	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	180
BccI	CCATC	2 cut(s)	121, 667
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	4 cut(s)	466, 500, 577, 611
BciT130I	CCWGG	2 cut(s)	350, 366
BcoDI	GTCTC	2 cut(s)	9, 500
BfaI	CTAG	2 cut(s)	323, 675
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	350, 366
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	350, 366
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	235, 585
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	4 cut(s)	66, 165, 364, 645
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 401
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	141, 770
BseBI	CCWGG	2 cut(s)	350, 366
BseDI	CCNNGG	4 cut(s)	66, 165, 364, 645
BseGI	GGATG	4 cut(s)	55, 132, 250, 304
BseLI	CCNNNNNNNGG	2 cut(s)	146, 401
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	141, 770
BseRI	GAGGAG	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	559
BshFI	GGCC	2 cut(s)	11, 211
BshTI	ACCGGT	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	146, 401
BsmAI	GTCTC	2 cut(s)	9, 500
BsnI	GGCC	2 cut(s)	11, 211
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	644
Bsp143I	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
BspACI	CCGC	4 cut(s)	63, 107, 248, 559
BspANI	GGCC	2 cut(s)	11, 211
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	117, 569, 617, 688
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	141, 770
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	66, 165, 364, 645
BssMI	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	350, 366
Bst4CI	ACNGT	2 cut(s)	514, 618
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	4 cut(s)	55, 132, 250, 304
BstFNI	CGCG	1 cut(s)	559
BstKTI	GATC	7 cut(s)	112, 137, 342, 374, 564, 625, 683
BstMAI	GTCTC	2 cut(s)	9, 500
BstMBI	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstNI	CCWGG	2 cut(s)	350, 366
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	348, 364
BstUI	CGCG	1 cut(s)	559
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	3 cut(s)	371, 622, 680
BstXI	CCANNNNNNTGG	2 cut(s)	40, 127
BstYI	RGATCY	3 cut(s)	371, 622, 680
BsuRI	GGCC	2 cut(s)	11, 211
BtsCI	GGATG	4 cut(s)	55, 132, 250, 304
BtsIMutI	CAGTG	1 cut(s)	148
CciI	TCATGA	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	209
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	3 cut(s)	40, 343, 635
CviJI	RGCY	9 cut(s)	11, 211, 261, 283, 328, 348, 444, 453, 692
CviKI_1	RGCY	9 cut(s)	11, 211, 261, 283, 328, 348, 444, 453, 692
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	7 cut(s)	111, 136, 341, 373, 563, 624, 682
DpnII	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	754
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	348, 364
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	3 cut(s)	43, 346, 638
FaiI	YATR	5 cut(s)	41, 344, 380, 636, 668
FalI	AAGNNNNNCTT	4 cut(s)	582, 614, 713, 745
FatI	CATG	3 cut(s)	39, 342, 634
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	4 cut(s)	62, 139, 257, 311
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	323, 675
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	11, 211
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	3 cut(s)	43, 346, 638
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	107, 129
Hpy166II	GTNNAC	4 cut(s)	219, 400, 426, 614
Hpy188I	TCNGA	6 cut(s)	76, 162, 376, 390, 622, 758
Hpy188III	TCNNGA	3 cut(s)	323, 343, 517
Hpy8I	GTNNAC	4 cut(s)	219, 400, 426, 614
Hpy99I	CGWCG	3 cut(s)	182, 404, 778
HpyAV	CCTTC	3 cut(s)	235, 268, 431
HpyCH4III	ACNGT	2 cut(s)	514, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	43, 346, 638
Kzo9I	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
LweI	GCATC	2 cut(s)	235, 585
MaeI	CTAG	2 cut(s)	323, 675
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	7 cut(s)	111, 136, 341, 373, 563, 624, 682
MboI	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
MboII	GAAGA	4 cut(s)	185, 208, 377, 562
MflI	RGATCY	3 cut(s)	371, 622, 680
MluCI	AATT	6 cut(s)	234, 304, 354, 381, 458, 739
MmeI	TCCRAC	3 cut(s)	27, 99, 292
MnlI	CCTC	8 cut(s)	91, 139, 160, 222, 258, 261, 464, 640
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	4 cut(s)	303, 336, 357, 738
MslI	CAYNNNNRTG	2 cut(s)	125, 635
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	350, 366
MvaI	CCWGG	2 cut(s)	350, 366
MvnI	CGCG	1 cut(s)	559
MwoI	GCNNNNNNNGC	1 cut(s)	450
NdeII	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
NlaIII	CATG	3 cut(s)	43, 346, 638
NlaIV	GGNNCC	1 cut(s)	210
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 183
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	348, 364
PspGI	CCWGG	2 cut(s)	348, 364
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	371, 622, 680
RseI	CAYNNNNRTG	2 cut(s)	125, 635
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	303, 336, 357, 738
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	7 cut(s)	109, 134, 339, 371, 561, 622, 680
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	350, 366
SetI	ASST	9 cut(s)	72, 263, 272, 285, 442, 474, 496, 694, 749
SfaNI	GCATC	2 cut(s)	235, 585
SmiMI	CAYNNNNRTG	2 cut(s)	125, 635
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	6 cut(s)	234, 304, 354, 381, 458, 739
SsiI	CCGC	4 cut(s)	63, 107, 248, 559
SspMI	CTAG	2 cut(s)	323, 675
StyD4I	CCNGG	2 cut(s)	348, 364
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	514, 618
TaqI	TCGA	4 cut(s)	26, 399, 543, 694
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	6 cut(s)	234, 304, 354, 381, 458, 739
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	4 cut(s)	303, 336, 357, 738
Tru9I	TTAA	4 cut(s)	303, 336, 357, 738
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	738
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	323, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.