Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

55843698 .. 55847341

Gene Structure 3644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0390600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGATCGATCAATCGGAGCCGCAAACCAAAAGCGAAGACCTCTTCAAAGCCGCCGAGACCGGCGACTCTTCGGCGTTCGAATCTCTCACTCCAAAGCAGCTCGCTTCAGCTTCCTCTCTCAGAAACGAGGACGGCCGCTCCCTCCTTCACGTCGCCGTCTCTTCCGGTCACTCTCAGGTGGTAAAGGTACTGCTAGCTGCTGATGAATCGAGTGGTGTGATAAACAGTAAGGATGAAGATGGTTGGGCACCGCTGCATTCTGCGGCGAGCAGTGGGAATGTAGTAATAGTGGAGATGCTGCTAAGCAAAGGAGCTGATGTTAATTTGAAGAACGATGGTGGTCGCGTTGCACTTCACTATGCTGCCAGCAAGGGATGGATGGAGATTGCTGAAAATTTGATCTCACACGGGGCGAAGCTTAATGTACAAGACAAGGTTGGTTCCACCCCATTGCATCGAGCAGCTAGTACTGGGAAATCACAATTGTGTGAACTTCTAATTGAGGAAGGAGCTGAAATTGATGTTGTTGATAAAGCAGGCCAGACTCCTCTTATGAGTGCTGTGATTTGCGAGAACAAGGAGGTTTCTCTCCTTCTAATAAGGCATGGAGCAGATGTGGATGTGGAAGACAAAGAAGGGTACACAGTGCTTGGTCGAGCTTCGAATGAGTTCAGACCATTATTGATTGATGCCGCTAAGGCGATGCTTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

239

Amino Acids

25.29

Weight (kDa)

4.83

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 112	1.9e-17	Ankyrin repeats (3 copies)
Ank_5	PF13857	77 - 122	3.7e-06	Ankyrin repeats (many copies)
Ank	PF00023	81 - 113	7.7e-09	Ankyrin repeat
Ank_4	PF13637	86 - 132	4.2e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	101 - 152	3e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	107 - 178	5.4e-14	Ankyrin repeats (3 copies)
Ank	PF00023	115 - 146	4e-06	Ankyrin repeat
Ank_4	PF13637	119 - 168	5.9e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	134 - 185	9.9e-07	Ankyrin repeats (many copies)
Ank	PF00023	148 - 179	3.1e-06	Ankyrin repeat
Ank_2	PF12796	155 - 222	9.5e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	1 cut(s)	348
AciI	CCGC	6 cut(s)	23, 54, 139, 254, 266, 696
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	4 cut(s)	192, 429, 472, 644
AgsI	TTSAA	3 cut(s)	49, 331, 713
AjiI	CACGTC	1 cut(s)	154
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	8 cut(s)	103, 113, 200, 317, 421, 467, 515, 662
AluI	AGCT	8 cut(s)	103, 113, 200, 317, 421, 467, 515, 662
Alw26I	GTCTC	2 cut(s)	53, 166
AoxI	GGCC	2 cut(s)	136, 541
ApeKI	GCWGC	6 cut(s)	100, 200, 256, 301, 365, 464
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	671
AsuII	TTCGAA	2 cut(s)	81, 665
AsuNHI	GCTAGC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	45, 636
BbvI	GCAGC	6 cut(s)	112, 187, 243, 288, 352, 476
BccI	CCATC	4 cut(s)	236, 332, 372, 376
BceAI	ACGGC	2 cut(s)	143, 151
BcoDI	GTCTC	2 cut(s)	53, 166
BfaI	CTAG	2 cut(s)	197, 468
BglI	GCCNNNNNGGC	1 cut(s)	701
BlpI	GCTNAGC	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	472
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	3 cut(s)	21, 252, 445
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	4 cut(s)	288, 466, 682, 696
BmtI	GCTAGC	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	45, 636
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	2 cut(s)	81, 665
Bsa29I	ATCGAT	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 306, 336, 603, 633
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	9
BseGI	GGATG	4 cut(s)	241, 383, 387, 628
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	136, 191
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	253
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	6 cut(s)	112, 187, 243, 288, 352, 476
Bsh1236I	CGCG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	138, 543
BshNI	GGYRCC	1 cut(s)	250
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	63, 168
BsmAI	GTCTC	2 cut(s)	53, 166
BsmBI	CGTCTC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	138, 543
Bso31I	GGTCTC	1 cut(s)	53
Bsp119I	TTCGAA	2 cut(s)	81, 665
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	6, 10, 402
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	6 cut(s)	23, 54, 139, 254, 266, 696
BspANI	GGCC	2 cut(s)	138, 543
BspCNI	CTCAG	2 cut(s)	135, 190
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	21, 252, 445
BspOI	GCTAGC	1 cut(s)	200
BspT104I	TTCGAA	2 cut(s)	81, 665
BspT107I	GGYRCC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	3 cut(s)	6, 10, 402
Bst4CI	ACNGT	2 cut(s)	230, 649
Bst6I	CTCTTC	3 cut(s)	50, 76, 169
BstAUI	TGTACA	1 cut(s)	427
BstBI	TTCGAA	2 cut(s)	81, 665
BstC8I	GCNNGC	5 cut(s)	105, 198, 271, 370, 541
BstDEI	CTNAG	4 cut(s)	122, 177, 305, 699
BstF5I	GGATG	4 cut(s)	241, 383, 387, 628
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	9, 13, 405
BstMAI	GTCTC	2 cut(s)	53, 166
BstMBI	GATC	3 cut(s)	6, 10, 402
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	6 cut(s)	112, 187, 243, 288, 352, 476
BstV2I	GAAGAC	2 cut(s)	45, 636
BstZI	CGGCCG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	138, 543
BsuTUI	ATCGAT	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	241, 383, 387, 628
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	280, 654
Cac8I	GCNNGC	5 cut(s)	105, 198, 271, 370, 541
Cfr10I	RCCGGY	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	4 cut(s)	191, 428, 471, 643
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	4 cut(s)	191, 428, 471, 643
DdeI	CTNAG	4 cut(s)	122, 177, 305, 699
DpnI	GATC	3 cut(s)	8, 12, 404
DpnII	GATC	3 cut(s)	6, 10, 402
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	50, 76, 169
EarI	CTCTTC	3 cut(s)	50, 76, 169
EclXI	CGGCCG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	611
FaiI	YATR	3 cut(s)	363, 557, 609
FatI	CATG	1 cut(s)	607
FokI	GGATG	4 cut(s)	248, 390, 394, 635
FspBI	CTAG	2 cut(s)	197, 468
HaeIII	GGCC	2 cut(s)	138, 543
HapII	CCGG	2 cut(s)	63, 168
Hin1II	CATG	1 cut(s)	611
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	4 cut(s)	68, 83, 209, 547
HpaII	CCGG	2 cut(s)	63, 168
Hpy166II	GTNNAC	2 cut(s)	494, 645
Hpy188I	TCNGA	3 cut(s)	19, 125, 677
Hpy8I	GTNNAC	2 cut(s)	494, 645
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	5 cut(s)	158, 503, 605, 632, 707
HpyCH4III	ACNGT	2 cut(s)	230, 649
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	259, 353, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	4 cut(s)	122, 177, 305, 699
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	611
Kzo9I	GATC	3 cut(s)	6, 10, 402
LmnI	GCTCC	5 cut(s)	19, 146, 314, 512, 611
LpnPI	CCDG	7 cut(s)	76, 164, 181, 382, 459, 525, 557
Lsp1109I	GCAGC	6 cut(s)	112, 187, 243, 288, 352, 476
LweI	GCATC	4 cut(s)	288, 466, 682, 696
MaeI	CTAG	2 cut(s)	197, 468
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	8, 12, 404
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	3 cut(s)	6, 10, 402
MboII	GAAGA	7 cut(s)	37, 50, 63, 156, 251, 343, 641
MfeI	CAATTG	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	5 cut(s)	325, 397, 485, 501, 519
MlyI	GAGTC	2 cut(s)	62, 541
MnlI	CCTC	7 cut(s)	53, 124, 127, 155, 499, 561, 577
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	2 cut(s)	324, 423
MslI	CAYNNNNRTG	1 cut(s)	487
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	2 cut(s)	63, 168
MunI	CAATTG	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	259
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeII	GATC	3 cut(s)	6, 10, 402
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	3 cut(s)	21, 252, 445
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	170
NspV	TTCGAA	2 cut(s)	81, 665
OliI	CACNNNNGTG	1 cut(s)	487
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	83, 209
PleI	GAGTC	2 cut(s)	62, 541
PpsI	GAGTC	2 cut(s)	62, 541
PspN4I	GGNNCC	3 cut(s)	21, 252, 445
RsaI	GTAC	4 cut(s)	192, 429, 472, 644
RsaNI	GTAC	4 cut(s)	191, 428, 471, 643
RseI	CAYNNNNRTG	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	324, 423
Sau3AI	GATC	3 cut(s)	6, 10, 402
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	2 cut(s)	62, 541
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	4 cut(s)	288, 466, 682, 696
SfuI	TTCGAA	2 cut(s)	81, 665
SmiMI	CAYNNNNRTG	1 cut(s)	487
Sse9I	AATT	5 cut(s)	325, 397, 485, 501, 519
SsiI	CCGC	6 cut(s)	23, 54, 139, 254, 266, 696
SspMI	CTAG	2 cut(s)	197, 468
TaaI	ACNGT	2 cut(s)	230, 649
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	6 cut(s)	9, 81, 212, 460, 658, 665
TasI	AATT	5 cut(s)	325, 397, 485, 501, 519
TatI	WGTACW	2 cut(s)	427, 470
TauI	GCSGC	5 cut(s)	25, 56, 141, 269, 698
TfiI	GAWTC	2 cut(s)	83, 209
Tru1I	TTAA	2 cut(s)	324, 423
Tru9I	TTAA	2 cut(s)	324, 423
TscAI	CASTG	2 cut(s)	280, 654
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	6 cut(s)	100, 200, 256, 301, 365, 464
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	222, 252
TspRI	CASTG	2 cut(s)	280, 654
XapI	RAATTY	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	2 cut(s)	197, 468
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.