Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Reverse (-)

95706230 .. 95708934

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTGATGGAGAAGACGAGAAAAAAGAGGAAGTTTCAGAGACGAAGAACAAGGGTGAGCCTAGTGCAGGAGGGATTGTCAGACCACCCAGTGACGGTTCCTTGTGTGTGACAGAGGATGAGGATGATGATGATGATGAACTAGCGAAGAAAATCGCGTTGGGCCCTCAGTGCACTCTCAAAGAACACATCCAGAAGGATGCGGATGATGAGAGCTTAAGGAGGTGGAAGGAACAGCTTCTTGGGGCTGTCGATGTCAATGCTGTTGGAGAATCTCTCGAACCAGAGGTTAAGATCCTGAGCCTTGCAATTAAATCGCCTGAAAGATCTGATATATTTCTTCCTATTCCGGAGGACGGAAAGCCCAACGGCTTGTGGTTCACTTTGAAAGAAGGTAGCAAATACAGCCTTGAATTTACGTTCCAGGTCAGCAATAACATTGTTTCAGGTCTCAAATACACCAACACAGTCTGGAAAACTGCTGTGAAGGTTGATAGCACAAAAGAGATGCTTGGAACCTTTAGTCCACAGTTGGAGCCTTATACACATGTTTTGCCTGAGGACACAACCCCATCTGGTATGTTTGCTAGGGGAACTTATTCAGCTAGAAGCAAGTTTCTTGATGATGACAACACATGCTACTTGGAGATCAATTACACCTTTGATATTAGGAAAGACTGGGCAGCAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

230

Amino Acids

25.58

Weight (kDa)

4.53

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	39 - 226	1.6e-84	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	413
AdeI	CACNNNGTG	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	68, 95, 356
AflII	CTTAAG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	2 cut(s)	388, 413
AjnI	CCWGG	1 cut(s)	423
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 225, 257
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	3 cut(s)	216, 238, 605
AluI	AGCT	3 cut(s)	216, 238, 605
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	2 cut(s)	35, 455
Alw44I	GTGCAC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	1 cut(s)	163
ApaI	GGGCCC	1 cut(s)	167
ApaLI	GTGCAC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	683, 686
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	2 cut(s)	237, 598
AspS9I	GGNCC	2 cut(s)	163, 164
AsuHPI	GGTGA	2 cut(s)	17, 68
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	2 cut(s)	167, 176
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	176
BccI	CCATC	2 cut(s)	2, 580
BceAI	ACGGC	1 cut(s)	385
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 297, 331
BciT130I	CCWGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	35, 455
BfaI	CTAG	4 cut(s)	63, 143, 588, 606
BfrI	CTTAAG	1 cut(s)	217
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	2 cut(s)	684, 687
BlsI	GCNGC	2 cut(s)	685, 688
Bme1390I	CCNGG	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	163, 164
BmiI	GGNNCC	4 cut(s)	100, 165, 517, 537
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	2 cut(s)	84, 688
BmsI	GCATC	2 cut(s)	190, 498
BmuI	ACTGGG	2 cut(s)	84, 688
BpiI	GAAGAC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu10I	CCTNAGC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	455
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 95, 356
Bse1I	ACTGG	2 cut(s)	90, 683
Bse21I	CCTNAGG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	425
BseGI	GGATG	5 cut(s)	124, 130, 189, 205, 211
BseLI	CCNNNNNNNGG	3 cut(s)	68, 95, 356
BseMII	CTCAG	3 cut(s)	182, 290, 549
BseNI	ACTGG	2 cut(s)	90, 683
BseSI	GKGCMC	2 cut(s)	167, 176
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	68, 95, 356
BsmAI	GTCTC	2 cut(s)	35, 455
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	455
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	167, 176
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	294, 326, 648
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	3 cut(s)	181, 291, 550
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	100, 165, 517, 537
BspPI	GGATC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	90, 683
BssMI	GATC	3 cut(s)	294, 326, 648
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	3 cut(s)	98, 469, 531
BstAFI	CTTAAG	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	168, 299, 558
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	5 cut(s)	124, 130, 189, 205, 211
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	297, 329, 651
BstMAI	GTCTC	2 cut(s)	35, 455
BstMBI	GATC	3 cut(s)	294, 326, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 405
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	2 cut(s)	551, 639
BstSCI	CCNGG	1 cut(s)	423
BstSLI	GKGCMC	2 cut(s)	167, 176
BstUI	CGCG	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	294, 326
BstYI	RGATCY	2 cut(s)	294, 326
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	5 cut(s)	124, 130, 189, 205, 211
BtsIMutI	CAGTG	2 cut(s)	97, 176
Cfr13I	GGNCC	2 cut(s)	163, 164
CviAII	CATG	2 cut(s)	548, 636
DdeI	CTNAG	3 cut(s)	168, 299, 558
DpnI	GATC	3 cut(s)	296, 328, 650
DpnII	GATC	3 cut(s)	294, 326, 648
DraIII	CACNNNGTG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	558
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	2 cut(s)	551, 639
FaiI	YATR	5 cut(s)	335, 543, 549, 581, 637
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	2 cut(s)	547, 635
Fnu4HI	GCNGC	2 cut(s)	684, 687
FokI	GGATG	5 cut(s)	131, 137, 176, 212, 218
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	684, 687
FspBI	CTAG	4 cut(s)	63, 143, 588, 606
GluI	GCNGC	2 cut(s)	684, 687
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	2 cut(s)	551, 639
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	17, 68
Hpy166II	GTNNAC	3 cut(s)	174, 381, 527
Hpy188I	TCNGA	3 cut(s)	40, 83, 331
Hpy188III	TCNNGA	6 cut(s)	193, 278, 298, 350, 472, 620
Hpy8I	GTNNAC	3 cut(s)	174, 381, 527
HpyAV	CCTTC	4 cut(s)	190, 223, 386, 481
HpyCH4III	ACNGT	3 cut(s)	98, 469, 531
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	68, 174, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 405
HpyF3I	CTNAG	3 cut(s)	168, 299, 558
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	551, 639
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	294, 326, 648
LmnI	GCTCC	1 cut(s)	535
LweI	GCATC	2 cut(s)	190, 498
MaeI	CTAG	4 cut(s)	63, 143, 588, 606
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	92, 109
MalI	GATC	3 cut(s)	296, 328, 650
MboI	GATC	3 cut(s)	294, 326, 648
MboII	GAAGA	4 cut(s)	26, 58, 160, 332
MflI	RGATCY	2 cut(s)	294, 326
MhlI	GDGCHC	2 cut(s)	167, 176
MluCI	AATT	3 cut(s)	309, 413, 652
MmeI	TCCRAC	2 cut(s)	247, 513
MnlI	CCTC	9 cut(s)	22, 65, 109, 115, 177, 216, 280, 346, 553
MroI	TCCGGA	1 cut(s)	349
MroXI	GAANNNNTTC	2 cut(s)	237, 598
MseI	TTAA	3 cut(s)	218, 291, 312
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	171, 405
NdeII	GATC	3 cut(s)	294, 326, 648
NlaIII	CATG	2 cut(s)	551, 639
NlaIV	GGNNCC	4 cut(s)	100, 165, 517, 537
NmuCI	GTSAC	2 cut(s)	92, 109
NspI	RCATGY	2 cut(s)	551, 639
PciI	ACATGT	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	237, 598
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	685, 688
PscI	ACATGT	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	4 cut(s)	100, 165, 517, 537
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	163, 164
PsuI	RGATCY	2 cut(s)	294, 326
SaqAI	TTAA	3 cut(s)	218, 291, 312
SatI	GCNGC	2 cut(s)	684, 687
Sau3AI	GATC	3 cut(s)	294, 326, 648
Sau96I	GGNCC	2 cut(s)	163, 164
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	167, 176
SfaNI	GCATC	2 cut(s)	190, 498
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	309, 413, 652
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	4 cut(s)	63, 143, 588, 606
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	98, 469, 531
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	252, 279
TasI	AATT	3 cut(s)	309, 413, 652
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	3 cut(s)	218, 291, 312
Tru9I	TTAA	3 cut(s)	218, 291, 312
TscAI	CASTG	2 cut(s)	97, 176
TseFI	GTSAC	2 cut(s)	92, 109
TseI	GCWGC	2 cut(s)	683, 686
Tsp45I	GTSAC	2 cut(s)	92, 109
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	2 cut(s)	97, 176
Vha464I	CTTAAG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	2 cut(s)	551, 639
XmnI	GAANNNNTTC	2 cut(s)	237, 598
XspI	CTAG	4 cut(s)	63, 143, 588, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.