Prupe.3G205000_v2.0.a1

Rho GDP-dissociation inhibitor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21282159 .. 21285326
3168 bp
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UTR
Exon/CDS
Intron
Prupe.3G205000.1

Sequence Viewer

Length: 687 bp
ATGGGGGGAGGAAAGAAGAGTGATCAAGAAACAGAGAAAGAAAATCAAGATGATACTGATAACGAGGCAGTAGAGGGAATTGGCAGACAGATGAGTGAGGCTTCTGTCTCTGCAGCTGAGGAGGAGGAAGATGAAGAAGGAAGCAACAAGATTCAGTTGGGTCCTCAATGCACTCTTAAAGAACAGATTGAGAAGGATAAGGATGATGAGAGTTTGAGGAGGTGGAAGGAACAGCTTCTTGGGGCTGTGGATTTTGAGAGTGTTGGAGAAACTCTTGAACCTGAAGTGAAGTTCATTCAACTGTCAATCCTCTCTCCTGATAGACCTGACATTGTTCTTGATATTCCGGAAGATGGGAAACCCAAGGGCTTATGGTTTACGCTGAAAGAAGGCAGTCCACACAACCTGAAATTCTCCTTCCAAGTTACCAATAACATTGTATCCGGCCTCAAGTACACCAACACTGTGTGGAAAACTGGTGTCAAGGTTGACAGCACAAAAGAGATGATTGGAACTTTCAGTCCTCAGCCAGAGCCTTACACACATTTGATGCCAGAAGAGACCACGCCTTCTGGCATATTTGCCAGAGGATCATATTCTGCAAGATCAAAGTTTCTGGACGATGATAACAAGTGCTACTTGGAAATCAATTACACCTTCGACATTCGAAAGGAATGGGCTAAATAA

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

4.58

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 346
AclWI GGATC 1 cut(s) 598
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 468
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 278, 299
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 2 cut(s) 116, 235
AluI AGCT 2 cut(s) 116, 235
Alw26I GTCTC 2 cut(s) 112, 554
AlwI GGATC 1 cut(s) 598
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 161
AsuII TTCGAA 1 cut(s) 667
AvaII GGWCC 1 cut(s) 161
BbvCI CCTCAGC 2 cut(s) 117, 525
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 347
BciVI GTATCC 1 cut(s) 451
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 112, 554
BfmI CTRYAG 1 cut(s) 111
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 540
Bpu10I CCTNAGC 2 cut(s) 117, 525
Bpu14I TTCGAA 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 2 cut(s) 108, 539
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 3 cut(s) 134, 137, 232
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 447
BsiSI CCGG 2 cut(s) 347, 444
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 112, 554
BsnI GGCC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 554
Bsp119I TTCGAA 1 cut(s) 667
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 22, 590, 605
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 109, 538
BspEI TCCGGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 598
BspT104I TTCGAA 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 554
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 22, 590, 605
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 303, 466
Bst6I CTCTTC 2 cut(s) 11, 552
BstBI TTCGAA 1 cut(s) 667
BstDEI CTNAG 2 cut(s) 117, 525
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 3 cut(s) 25, 593, 608
BstMAI GTCTC 2 cut(s) 112, 554
BstMBI GATC 3 cut(s) 22, 590, 605
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 454
CviJI RGCY 9 cut(s) 101, 116, 235, 245, 369, 447, 529, 535, 680
CviKI_1 RGCY 9 cut(s) 101, 116, 235, 245, 369, 447, 529, 535, 680
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 2 cut(s) 117, 525
DpnI GATC 3 cut(s) 24, 592, 607
DpnII GATC 3 cut(s) 22, 590, 605
DraIII CACNNNGTG 1 cut(s) 468
Eam1104I CTCTTC 2 cut(s) 11, 552
EarI CTCTTC 2 cut(s) 11, 552
Eco130I CCWWGG 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaiI YATR 3 cut(s) 373, 578, 595
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 347, 444
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 1 cut(s) 151
HpaII CCGG 2 cut(s) 347, 444
Hpy166II GTNNAC 4 cut(s) 378, 398, 456, 490
Hpy188III TCNNGA 7 cut(s) 26, 47, 275, 317, 338, 347, 617
Hpy8I GTNNAC 4 cut(s) 378, 398, 456, 490
HpyAV CCTTC 7 cut(s) 131, 187, 220, 383, 427, 579, 667
HpyCH4III ACNGT 2 cut(s) 303, 466
HpyCH4V TGCA 3 cut(s) 113, 171, 602
HpyF3I CTNAG 2 cut(s) 117, 525
Kpn2I TCCGGA 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 590, 605
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 424
MalI GATC 3 cut(s) 24, 592, 607
MboI GATC 3 cut(s) 22, 590, 605
MboII GAAGA 5 cut(s) 28, 140, 146, 362, 569
MluCI AATT 3 cut(s) 78, 410, 649
MmeI TCCRAC 1 cut(s) 244
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 2 cut(s) 347, 444
NdeII GATC 3 cut(s) 22, 590, 605
NlaIV GGNNCC 1 cut(s) 162
NspV TTCGAA 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 161
PspPPI RGGWCCY 1 cut(s) 161
PstI CTGCAG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 22, 590, 605
Sau96I GGNCC 1 cut(s) 161
SetI ASST 8 cut(s) 118, 224, 237, 283, 328, 408, 489, 659
SfaNI GCATC 1 cut(s) 540
SfcI CTRYAG 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 78, 410, 649
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 303, 466
TaqI TCGA 2 cut(s) 660, 667
TasI AATT 3 cut(s) 78, 410, 649
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 469
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 147, 283
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.