Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

778266 .. 781147

Gene Structure 2882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTTGTAATGTTACCTAGCTGCCTGAATGTTTCGCTTATATGCTGCTGCATTCAGCTAGAACAGATGCAAAGTTTTATTTTTTCTGATGGAAGAAGTTCGTGCTTTTGTGTTTCTGCAGAATCTCTCGAACCAGAGGTTAAGATCCTGAGCCTTGCAATTAAATCGCCTGAAAGATCTGATATATTTCTTCCAATTCCGGAGGACGGAAAGCCTAACGGCTTGTGGTTCACTTTGAAAGAAGGTAGCAAATACAGCCTTGAATTTACGTTCCAGGTCAGCAATAACATTGTTTCAGGTCTCAAATACACCAACACAGTCTGGAAAACTGCTGTGAAGGTTGATAGCACAAAAGAGATGCTTGGAACCTTTAGTCCACAGTTGGAGCCTTATACACATGTTTTGCCTGAGGACACAACCCCATCTGGTATGTTTGCTAGGGGAACTTATTCAGCTAGAAGCAAGGTAATCTTCCAAACCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

5.43

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	40 - 157	3.5e-50	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	238, 263
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	358, 390
AluBI	AGCT	4 cut(s)	21, 58, 455, 483
AluI	AGCT	4 cut(s)	21, 58, 455, 483
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	139
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	21, 45, 48
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	2 cut(s)	97, 448
AxyI	CCTNAGG	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	8, 32, 35
BccI	CCATC	2 cut(s)	83, 430
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	4 cut(s)	18, 59, 438, 456
BfmI	CTRYAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	3 cut(s)	22, 46, 49
BlsI	GCNGC	3 cut(s)	23, 47, 50
Bme1390I	CCNGG	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	367, 387
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	57, 348
Bpu10I	CCTNAGC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse21I	CCTNAGG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	140, 399
BseXI	GCAGC	3 cut(s)	8, 32, 35
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	144, 176
BspCNI	CTCAG	2 cut(s)	141, 400
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	367, 387
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	305
BssMI	GATC	2 cut(s)	144, 176
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	319, 381
BstDEI	CTNAG	2 cut(s)	149, 408
BstKTI	GATC	2 cut(s)	147, 179
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	144, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	8, 32, 35
BstX2I	RGATCY	2 cut(s)	144, 176
BstYI	RGATCY	2 cut(s)	144, 176
Bsu36I	CCTNAGG	1 cut(s)	408
CviAII	CATG	1 cut(s)	398
CviJI	RGCY	9 cut(s)	21, 58, 153, 214, 222, 258, 388, 455, 483
CviKI_1	RGCY	9 cut(s)	21, 58, 153, 214, 222, 258, 388, 455, 483
DdeI	CTNAG	2 cut(s)	149, 408
DpnI	GATC	2 cut(s)	146, 178
DpnII	GATC	2 cut(s)	144, 176
Eco31I	GGTCTC	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	401
FaiI	YATR	6 cut(s)	41, 43, 185, 393, 399, 431
FalI	AAGNNNNNCTT	3 cut(s)	345, 377, 455
FatI	CATG	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	22, 46, 49
Fsp4HI	GCNGC	3 cut(s)	22, 46, 49
FspBI	CTAG	4 cut(s)	18, 59, 438, 456
GluI	GCNGC	3 cut(s)	22, 46, 49
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	1 cut(s)	401
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	231, 377
Hpy188I	TCNGA	2 cut(s)	88, 181
Hpy188III	TCNNGA	4 cut(s)	128, 148, 200, 322
Hpy8I	GTNNAC	2 cut(s)	231, 377
HpyAV	CCTTC	2 cut(s)	236, 331
HpyCH4III	ACNGT	2 cut(s)	319, 381
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	51, 70, 119, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	149, 408
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	144, 176
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	3 cut(s)	8, 32, 35
LweI	GCATC	2 cut(s)	57, 348
MaeI	CTAG	4 cut(s)	18, 59, 438, 456
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	146, 178
MboI	GATC	2 cut(s)	144, 176
MboII	GAAGA	3 cut(s)	105, 182, 463
MflI	RGATCY	2 cut(s)	144, 176
MluCI	AATT	3 cut(s)	159, 195, 263
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	3 cut(s)	130, 196, 403
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	97, 448
MseI	TTAA	2 cut(s)	141, 162
MspA1I	CMGCKG	1 cut(s)	483
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	2 cut(s)	144, 176
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	2 cut(s)	367, 387
NspI	RCATGY	1 cut(s)	401
PciI	ACATGT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	51
PdmI	GAANNNNTTC	2 cut(s)	97, 448
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	23, 47, 50
PscI	ACATGT	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	367, 387
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	144, 176
PvuII	CAGCTG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	141, 162
SatI	GCNGC	3 cut(s)	22, 46, 49
Sau3AI	GATC	2 cut(s)	144, 176
ScrFI	CCNGG	1 cut(s)	275
SfaNI	GCATC	2 cut(s)	57, 348
SfcI	CTRYAG	1 cut(s)	117
Sse9I	AATT	3 cut(s)	159, 195, 263
SspMI	CTAG	4 cut(s)	18, 59, 438, 456
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	319, 381
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	159, 195, 263
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	141, 162
Tru9I	TTAA	2 cut(s)	141, 162
TseI	GCWGC	3 cut(s)	21, 45, 48
TspGWI	ACGGA	1 cut(s)	222
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	97, 448
XspI	CTAG	4 cut(s)	18, 59, 438, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.