Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Forward (+)

69766892 .. 69767984

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGATAAAGAAGAGGAATCTGTCATATTGCTTTTGTTTTCCCCCTCGTTCCGCATTCAACTTACTGAAACTCTAGACCCAGAAGTAAAGATTATTAGCCTCTCAATCCTCACTCCTGATAGACCTGACATTGTTCTTGATGTTCCGGACAATGGAAAACCCAAAGGCTTGTGGTTTACTCTGAAGGAAGGTAGTCCTCACAACTTGAAATTCTCCTTCCGAGTTAGCAATAACATTGTATCTGGCCTCAAGTACACCAATACTGTTTGGAAAACCGGCGTCAAGGTGGACAGCACAAAAGAGATGATTGGAACCTTCAGTCCTCAGCCAGAGCCATACACACATGTGATGCCAGAAGTGGTCACACCTTCCGGCATGTTTGCAAGAGGATCATATTCTGCAAGATCAAAGTTTCTTGACGATGATAACAAGTGCTACTTGGAAATCAATTACACCTTTGATATTCGAAAGGAATGGGCTGCGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

163

Amino Acids

18.53

Weight (kDa)

5.25

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	21 - 159	1.2e-62	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	206, 304
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	62, 211
AleI	CACNNNNGTG	1 cut(s)	347
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
AlwI	GGATC	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	469
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	469
BfaI	CTAG	2 cut(s)	77, 490
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	149, 279, 375
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	392, 407
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	2 cut(s)	392, 407
BssNI	GRCGYC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	395, 410
BstMBI	GATC	2 cut(s)	392, 407
BstNSI	RCATGY	2 cut(s)	350, 382
BstV1I	GCAGC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	278
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	347, 379
CviJI	RGCY	6 cut(s)	102, 171, 249, 331, 337, 482
CviKI_1	RGCY	6 cut(s)	102, 171, 249, 331, 337, 482
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	394, 409
DpnII	GATC	2 cut(s)	392, 407
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	206, 304
FaeI	CATG	2 cut(s)	350, 382
FaiI	YATR	5 cut(s)	29, 340, 348, 380, 397
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	2 cut(s)	346, 378
Fnu4HI	GCNGC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	77, 490
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	3 cut(s)	149, 279, 375
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	350, 382
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	3 cut(s)	149, 279, 375
Hpy166II	GTNNAC	3 cut(s)	180, 258, 292
Hpy188I	TCNGA	2 cut(s)	186, 224
Hpy188III	TCNNGA	5 cut(s)	77, 119, 140, 149, 419
Hpy8I	GTNNAC	3 cut(s)	180, 258, 292
HpyAV	CCTTC	5 cut(s)	181, 185, 229, 328, 381
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	386, 404
HpyF3I	CTNAG	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	350, 382
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	392, 407
LpnPI	CCDG	9 cut(s)	96, 132, 141, 162, 231, 292, 345, 369, 388
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	77, 490
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	394, 409
MboI	GATC	2 cut(s)	392, 407
MboII	GAAGA	2 cut(s)	17, 26
MluCI	AATT	2 cut(s)	212, 451
MnlI	CCTC	8 cut(s)	10, 58, 113, 122, 210, 260, 336, 383
MroI	TCCGGA	1 cut(s)	148
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	3 cut(s)	149, 279, 375
Mva1269I	GAATGC	1 cut(s)	57
NdeII	GATC	2 cut(s)	392, 407
NlaIII	CATG	2 cut(s)	350, 382
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	350, 382
NspV	TTCGAA	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	347
PciI	ACATGT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	2 cut(s)	392, 407
SetI	ASST	6 cut(s)	130, 196, 291, 320, 373, 461
SfaNI	GCATC	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	212, 451
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	77, 490
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	469
TasI	AATT	2 cut(s)	212, 451
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	212
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	2 cut(s)	350, 382
XspI	CTAG	2 cut(s)	77, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.