Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Reverse (-)

7909388 .. 7911694

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGGGGAGGAGAGAAGAGTGACAAAAAAACAAAGAAAGAAAACCAGGATGATACAGATAGTGAAGGAGTGGAGGGGATTGGGAGGCAGATGAGTGAGACTTCTGTTTCTGCGGCTGAGGAGGAGGAAGACGAAGAGGGAAGCAGTAAAATTCAGTTGGGTCCTCAGTGCACTCTCAAAGAACAGATTGAGAAGGATAAGGATGATGAGAGTTTGAGGAGGTGGAAGGAGCAGCTTCTTGGGGCTGTAGATTTTGAGAATGTTGGAGAAACTCTTGAACCAGAAGTGAAGTTCATTCAGCTTTCAATCCTTTCTCCTGGTAGACCTGACATTGTTCTTGATATTCCGGGAGATGGGAAACCCAAAGGCTTATGGTTCACGCTGAAAGAAGGTAGTCCGCATAACCTGAAGTTCTCCTTCCAAGTTAGCAATAACATTGTATCCGGCCTCAAGTACACCAACACTGTTTGGAAAACTGGTGTCAAGGTTGACAGCACAAAAGAGATGATTGGAACTTTCAGTCCTCAGCAAGAGCCTTACATACATGTGATGCCGGAAGACACCACGCCTTCTGGCATGTTTGCCAGAGGTTCATATTCTGCAAGATCAAAGTTTCTTGACGATGATAACAAGTGCTACTTGGATCGATCAATTACACCTTCGATATTCGAAAGGAATGGGCTAAATAAACAGATAATTTCCCACGGAGTGCTAGCATATCTCTTCCATTCAGCTGATGTTCTCACACAGCTGACGTTCTTTACACCGCAGTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

260

Amino Acids

28.89

Weight (kDa)

4.86

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	39 - 216	3e-81	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	3 cut(s)	113, 398, 767
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	2 cut(s)	278, 306
AjnI	CCWGG	2 cut(s)	45, 316
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	4 cut(s)	235, 301, 734, 751
AluI	AGCT	4 cut(s)	235, 301, 734, 751
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	651
AoxI	GGCC	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	669
AsuNHI	GCTAGC	1 cut(s)	712
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	135, 564
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	2 cut(s)	117, 525
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	47, 318
BciVI	GTATCC	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	114, 233
BlsI	GCNGC	2 cut(s)	115, 234
Bme1390I	CCNGG	3 cut(s)	47, 318, 348
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	3 cut(s)	47, 318, 348
BmsI	GCATC	1 cut(s)	540
BmtI	GCTAGC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	135, 564
Bpu10I	CCTNAGC	2 cut(s)	117, 525
Bpu14I	TTCGAA	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	47, 318
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	2 cut(s)	55, 208
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	108, 179, 539
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	4 cut(s)	24, 134, 137, 232
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	447
BshVI	ATCGAT	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	347, 444, 554
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	605, 643, 647
BspACI	CCGC	3 cut(s)	113, 398, 767
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	109, 178, 538
BspDI	ATCGAT	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	651
BspT104I	TTCGAA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	605, 643, 647
Bst2UI	CCWGG	2 cut(s)	47, 318
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	11, 129, 728
BstBI	TTCGAA	1 cut(s)	669
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	3 cut(s)	117, 165, 525
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	2 cut(s)	55, 208
BstKTI	GATC	3 cut(s)	608, 646, 650
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	605, 643, 647
BstNI	CCWGG	2 cut(s)	47, 318
BstNSI	RCATGY	2 cut(s)	548, 580
BstSCI	CCNGG	3 cut(s)	45, 316, 346
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	2 cut(s)	135, 564
Bsu15I	ATCGAT	1 cut(s)	646
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	2 cut(s)	55, 208
BtsIMutI	CAGTG	2 cut(s)	173, 462
Cac8I	GCNNGC	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	545, 577
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	117, 165, 525
DpnI	GATC	3 cut(s)	607, 645, 649
DpnII	GATC	3 cut(s)	605, 643, 647
DraIII	CACNNNGTG	1 cut(s)	709
Eam1104I	CTCTTC	3 cut(s)	11, 129, 728
EarI	CTCTTC	3 cut(s)	11, 129, 728
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	45, 316
FaeI	CATG	2 cut(s)	548, 580
FaiI	YATR	7 cut(s)	373, 402, 542, 546, 578, 595, 718
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 623, 655
FatI	CATG	2 cut(s)	544, 576
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	114, 233
FokI	GGATG	2 cut(s)	62, 215
Fsp4HI	GCNGC	2 cut(s)	114, 233
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	2 cut(s)	114, 233
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	347, 444, 554
Hin1II	CATG	2 cut(s)	548, 580
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HpaII	CCGG	3 cut(s)	347, 444, 554
Hpy166II	GTNNAC	5 cut(s)	171, 323, 378, 456, 490
Hpy188III	TCNNGA	3 cut(s)	275, 338, 617
Hpy8I	GTNNAC	5 cut(s)	171, 323, 378, 456, 490
HpyAV	CCTTC	7 cut(s)	59, 187, 220, 383, 427, 579, 669
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	2 cut(s)	171, 602
HpyF3I	CTNAG	3 cut(s)	117, 165, 525
HpySE526I	ACGT	1 cut(s)	755
Hsp92II	CATG	2 cut(s)	548, 580
Kzo9I	GATC	3 cut(s)	605, 643, 647
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	607, 645, 649
MboI	GATC	3 cut(s)	605, 643, 647
MboII	GAAGA	5 cut(s)	28, 140, 146, 569, 715
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	150, 651, 696
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	1 cut(s)	778
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	734, 751
MspI	CCGG	3 cut(s)	347, 444, 554
MspR9I	CCNGG	3 cut(s)	47, 318, 348
MvaI	CCWGG	2 cut(s)	47, 318
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	605, 643, 647
NheI	GCTAGC	1 cut(s)	712
NlaIII	CATG	2 cut(s)	548, 580
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	548, 580
NspV	TTCGAA	1 cut(s)	669
PciI	ACATGT	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	115, 234
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	45, 316
PspGI	CCWGG	2 cut(s)	45, 316
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PvuII	CAGCTG	2 cut(s)	734, 751
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	778
SatI	GCNGC	2 cut(s)	114, 233
Sau3AI	GATC	3 cut(s)	605, 643, 647
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	3 cut(s)	47, 318, 348
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	669
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	150, 651, 696
SsiI	CCGC	3 cut(s)	113, 398, 767
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	3 cut(s)	45, 316, 346
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	3 cut(s)	646, 662, 669
TasI	AATT	3 cut(s)	150, 651, 696
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	778
Tru9I	TTAA	1 cut(s)	778
TscAI	CASTG	2 cut(s)	173, 469
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	283, 582
TspGWI	ACGGA	1 cut(s)	720
TspRI	CASTG	2 cut(s)	173, 469
VneI	GTGCAC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	2 cut(s)	548, 580
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.