Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003575

Physical Location & Seq

Genomic Coordinates Reverse (-)

9192068 .. 9194999

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1119200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGGGGAGGAGAGAAGAGTGACAAAGAAACAAAGAAAGAAAACCAAGGTGATACAGATAATGAAGGAGTTGAGGGGATTGGGAGGCAGATGAGTGAGACTTCCGTCTCTGCAGCTGAGGAGGAGGAAGATGAAGAAGGAAGCAGTAAAATTCAGTTGGGTCCCCAATGCACTCTTAAGGAACAGATTGAGAAGGATAAGGATGATGAGAGTTTGAGGAGGTGGAAGGAGCAGCTGCTTGGGGCTGTGGATTTTGAGAATGTTGGGGAAACTCTTGAACCAGAAGTGAAGTTCATTCAGCTGTCAATCCTTTCTCCTGGTAGACCTGACATTGTTCTTGATATTCCGGAAGATGGGAAACCCAAAGGCTTATGGTTTACGCTGAAAGAAGGTAGTCCGCACAACCTGAAGTTCTCCTTCCAAGTTAAGAATAACATTGTGTCCGGCCTCAAGTACACCAACACTGTTTGGAAAACTGGTGTCAAGGTCGACAGCACAAAAGAGATGATTGGAACTTTCAGTCCTCAGCAAGAGCCTTACATACATGTGATGCCGGAAGAGACCACACCTTCTGGCATGTTTGCCAGAGGATCATATTCTGCAAGATCAAAGTTTCTTGACGATGATAACAAGTGCTACCTGGAGATCAATTACACCTTCGATATTCGAAAGGAATGGGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

229

Amino Acids

25.71

Weight (kDa)

4.75

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	39 - 225	1.4e-87	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07880
fragaria_vesca	FvH4_3g00970 FvH4_6g41510 FvH4_6g41510
malus_domestica	MD05G1357900.v1.1 MD09G1119200.v1.1 MD10G1331800.v1.1 MD17G1110100.v1.1
prunus_persica	Prupe.3G205000_v2.0.a1 Prupe.4G010300_v2.0.a1
pyrus_communis	pycom05g32370 pycom09g04410 pycom10g28140 pycom17g10240
rosa_chinensis	RchiOBHm_Chr2g0157191 RchiOBHm_Chr5g0001491
rosa_laevigata	RLG00000020970 RLG00000030933
rosa_multiflora	Rmu_sc0006282.1_g000009 Rmu_sc0034761.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074900 Rroxscaffold_2G00092430
rosa_rugosa	Rorug02G0458000 Rorug02G0458100 Rorug04G0390600
rosa_samantha	Rh2AG523700 Rh2CG508500 Rh2DG547000 Rh5AG011600 Rh5BG014100 Rh5CG012600 Rh5DG011900
rosa_wichuraiana	Rw2G043310 Rw2G043370 Rw5G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	322, 489
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	316, 639
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	3 cut(s)	116, 235, 301
AluI	AGCT	3 cut(s)	116, 235, 301
Alw26I	GTCTC	3 cut(s)	92, 112, 554
AlwI	GGATC	1 cut(s)	598
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	113, 232, 235
ApoI	RAATTY	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	161
BbvCI	CCTCAGC	2 cut(s)	117, 525
BbvI	GCAGC	3 cut(s)	125, 222, 244
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	318, 641
BcoDI	GTCTC	3 cut(s)	92, 112, 554
BfmI	CTRYAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	3 cut(s)	114, 233, 236
BlsI	GCNGC	3 cut(s)	115, 234, 237
Bme1390I	CCNGG	2 cut(s)	318, 641
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	162, 163
BmrFI	CCNGG	2 cut(s)	318, 641
BmsI	GCATC	1 cut(s)	540
BoxI	GACNNNNGTC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	117, 525
Bpu14I	TTCGAA	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	481
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	318, 641
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	108, 539
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	4 cut(s)	24, 134, 137, 232
BseXI	GCAGC	3 cut(s)	125, 222, 244
BshFI	GGCC	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	347, 444, 554
BslFI	GGGAC	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	92, 112, 554
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	667
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	590, 605, 645
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	109, 538
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	162, 163
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	598
BspT104I	TTCGAA	1 cut(s)	667
BspTI	CTTAAG	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	3 cut(s)	590, 605, 645
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	318, 641
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	11, 552
BstAFI	CTTAAG	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	667
BstDEI	CTNAG	2 cut(s)	117, 525
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	593, 608, 648
BstMAI	GTCTC	3 cut(s)	92, 112, 554
BstMBI	GATC	3 cut(s)	590, 605, 645
BstNI	CCWGG	2 cut(s)	318, 641
BstNSI	RCATGY	2 cut(s)	548, 580
BstPAI	GACNNNNGTC	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	316, 639
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	125, 222, 244
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	545, 577
CviJI	RGCY	8 cut(s)	116, 235, 245, 301, 369, 447, 535, 680
CviKI_1	RGCY	8 cut(s)	116, 235, 245, 301, 369, 447, 535, 680
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	117, 525
DpnI	GATC	3 cut(s)	592, 607, 647
DpnII	GATC	3 cut(s)	590, 605, 645
Eam1104I	CTCTTC	2 cut(s)	11, 552
EarI	CTCTTC	2 cut(s)	11, 552
Eco130I	CCWWGG	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	316, 639
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	548, 580
FaiI	YATR	5 cut(s)	373, 542, 546, 578, 595
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	544, 576
FblI	GTMKAC	2 cut(s)	322, 489
Fnu4HI	GCNGC	3 cut(s)	114, 233, 236
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	114, 233, 236
GluI	GCNGC	3 cut(s)	114, 233, 236
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	347, 444, 554
Hin1II	CATG	2 cut(s)	548, 580
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HpaII	CCGG	3 cut(s)	347, 444, 554
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	4 cut(s)	323, 378, 456, 490
Hpy188III	TCNNGA	4 cut(s)	275, 338, 347, 617
Hpy8I	GTNNAC	4 cut(s)	323, 378, 456, 490
HpyAV	CCTTC	8 cut(s)	59, 131, 187, 220, 383, 427, 579, 667
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	113, 171, 602
HpyF3I	CTNAG	2 cut(s)	117, 525
Hsp92II	CATG	2 cut(s)	548, 580
KflI	GGGWCCC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	590, 605, 645
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	3 cut(s)	125, 222, 244
LweI	GCATC	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	592, 607, 647
MboI	GATC	3 cut(s)	590, 605, 645
MboII	GAAGA	5 cut(s)	28, 140, 146, 362, 569
MluCI	AATT	2 cut(s)	150, 649
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	2 cut(s)	177, 426
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	3 cut(s)	116, 235, 301
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	3 cut(s)	347, 444, 554
MspR9I	CCNGG	2 cut(s)	318, 641
MvaI	CCWGG	2 cut(s)	318, 641
NdeII	GATC	3 cut(s)	590, 605, 645
NlaIII	CATG	2 cut(s)	548, 580
NlaIV	GGNNCC	2 cut(s)	162, 163
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	548, 580
NspV	TTCGAA	1 cut(s)	667
PciI	ACATGT	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	115, 234, 237
PpuMI	RGGWCCY	1 cut(s)	161
PscI	ACATGT	1 cut(s)	544
PshAI	GACNNNNGTC	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	316, 639
PspGI	CCWGG	2 cut(s)	316, 639
PspN4I	GGNNCC	2 cut(s)	162, 163
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	115
PvuII	CAGCTG	3 cut(s)	116, 235, 301
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	545
SalI	GTCGAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	177, 426
SatI	GCNGC	3 cut(s)	114, 233, 236
Sau3AI	GATC	3 cut(s)	590, 605, 645
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	318, 641
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	176, 449
SmoI	CTYRAG	2 cut(s)	176, 449
Sse9I	AATT	2 cut(s)	150, 649
SsiI	CCGC	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	316, 639
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	489, 660, 667
TasI	AATT	2 cut(s)	150, 649
TatI	WGTACW	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	177, 426
Tru9I	TTAA	2 cut(s)	177, 426
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	113, 232, 235
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	78, 147, 283
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	469
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	2 cut(s)	548, 580
XmiI	GTMKAC	2 cut(s)	322, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.