Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

3304225 .. 3306504

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10572.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGCTCTATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAACATTGATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAATCTGCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAATGAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACTGGAGTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAGTTCTTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTACAAAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAGCTGTATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGGGTTGAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCCTTACTTTCTCTCAAAACAGCTAGTTCTTTTGAGGAAAATTCCAAAGATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAGATTGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCATCCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTAAGCCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGGATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCGTTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.47

Weight (kDa)

5.82

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	482
AclI	AACGTT	1 cut(s)	34
AclWI	GGATC	1 cut(s)	890
AcsI	RAATTY	2 cut(s)	503, 634
AfaI	GTAC	3 cut(s)	339, 418, 461
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	8 cut(s)	32, 200, 284, 311, 510, 542, 856, 977
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	7 cut(s)	140, 272, 478, 548, 617, 869, 937
AluI	AGCT	7 cut(s)	140, 272, 478, 548, 617, 869, 937
Alw21I	GWGCWC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	890
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	269, 548, 869, 968
ApoI	RAATTY	2 cut(s)	503, 634
AseI	ATTAAT	1 cut(s)	836
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	558
BauI	CACGAG	1 cut(s)	907
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	4 cut(s)	281, 535, 856, 980
BccI	CCATC	1 cut(s)	768
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	1 cut(s)	805
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	3 cut(s)	50, 524, 618
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	4 cut(s)	270, 549, 870, 969
BlsI	GCNGC	4 cut(s)	271, 550, 871, 970
Bme1390I	CCNGG	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	2 cut(s)	318, 429
BpuEI	CTTGAG	2 cut(s)	129, 758
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	881
BsaJI	CCNNGG	2 cut(s)	740, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	805
BseDI	CCNNGG	2 cut(s)	740, 804
BseGI	GGATG	2 cut(s)	755, 760
BseJI	GATNNNNATC	1 cut(s)	881
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	30, 549
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	281, 535, 856, 980
BshFI	GGCC	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	151, 882
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	2 cut(s)	31, 550
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	740, 804
BssMI	GATC	2 cut(s)	151, 882
BssNAI	GTATAC	1 cut(s)	483
BssSI	CACGAG	1 cut(s)	907
BssT1I	CCWWGG	1 cut(s)	740
Bst1107I	GTATAC	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	907
Bst2UI	CCWGG	1 cut(s)	805
Bst4CI	ACNGT	2 cut(s)	226, 443
Bst6I	CTCTTC	3 cut(s)	63, 348, 851
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	893, 939
BstDEI	CTNAG	4 cut(s)	39, 193, 558, 767
BstF5I	GGATG	2 cut(s)	755, 760
BstKTI	GATC	2 cut(s)	154, 885
BstMBI	GATC	2 cut(s)	151, 882
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	1 cut(s)	803
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	281, 535, 856, 980
BstZ17I	GTATAC	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	755, 760
Cac8I	GCNNGC	2 cut(s)	893, 939
CciI	TCATGA	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	3 cut(s)	338, 417, 460
CviAII	CATG	9 cut(s)	164, 209, 431, 463, 517, 534, 734, 799, 999
CviQI	GTAC	3 cut(s)	338, 417, 460
DdeI	CTNAG	4 cut(s)	39, 193, 558, 767
DpnI	GATC	2 cut(s)	153, 884
DpnII	GATC	2 cut(s)	151, 882
Eam1104I	CTCTTC	3 cut(s)	63, 348, 851
EarI	CTCTTC	3 cut(s)	63, 348, 851
Eco130I	CCWWGG	1 cut(s)	740
Eco81I	CCTNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	803
EcoT14I	CCWWGG	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	9 cut(s)	167, 212, 434, 466, 520, 537, 737, 802, 1002
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	9 cut(s)	163, 208, 430, 462, 516, 533, 733, 798, 998
FauNDI	CATATG	1 cut(s)	842
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	4 cut(s)	270, 549, 870, 969
FokI	GGATG	2 cut(s)	742, 747
Fsp4HI	GCNGC	4 cut(s)	270, 549, 870, 969
FspBI	CTAG	3 cut(s)	50, 524, 618
GluI	GCNGC	4 cut(s)	270, 549, 870, 969
GsuI	CTGGAG	2 cut(s)	318, 429
HaeIII	GGCC	1 cut(s)	522
Hin1II	CATG	9 cut(s)	167, 212, 434, 466, 520, 537, 737, 802, 1002
HindIII	AAGCTT	2 cut(s)	138, 935
HinfI	GANTC	8 cut(s)	77, 176, 213, 426, 644, 707, 902, 958
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	4 cut(s)	338, 376, 483, 906
Hpy188I	TCNGA	2 cut(s)	40, 133
Hpy188III	TCNNGA	4 cut(s)	164, 350, 715, 931
Hpy8I	GTNNAC	4 cut(s)	338, 376, 483, 906
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	2 cut(s)	226, 443
HpyCH4IV	ACGT	2 cut(s)	34, 340
HpyCH4V	TGCA	6 cut(s)	208, 269, 500, 551, 592, 968
HpyF3I	CTNAG	4 cut(s)	39, 193, 558, 767
HpySE526I	ACGT	2 cut(s)	34, 340
Hsp92II	CATG	9 cut(s)	167, 212, 434, 466, 520, 537, 737, 802, 1002
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 882
Lsp1109I	GCAGC	4 cut(s)	281, 535, 856, 980
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	50, 524, 618
MaeII	ACGT	2 cut(s)	34, 340
MaeIII	GTNAC	2 cut(s)	44, 744
MalI	GATC	2 cut(s)	153, 884
MboI	GATC	2 cut(s)	151, 882
MboII	GAAGA	7 cut(s)	78, 80, 281, 365, 597, 639, 868
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	6 cut(s)	27, 158, 503, 634, 791, 972
MlyI	GAGTC	2 cut(s)	86, 911
MmeI	TCCRAC	3 cut(s)	153, 156, 811
MnlI	CCTC	7 cut(s)	64, 100, 553, 622, 774, 782, 972
MseI	TTAA	2 cut(s)	245, 836
MspR9I	CCNGG	1 cut(s)	805
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	805
NdeI	CATATG	1 cut(s)	842
NdeII	GATC	2 cut(s)	151, 882
NlaIII	CATG	9 cut(s)	167, 212, 434, 466, 520, 537, 737, 802, 1002
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	744
NspI	RCATGY	1 cut(s)	802
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	6 cut(s)	176, 213, 426, 644, 707, 958
PflMI	CCANNNNNTGG	1 cut(s)	534
PkrI	GCNGC	4 cut(s)	271, 550, 871, 970
PleI	GAGTC	2 cut(s)	85, 910
PpsI	GAGTC	2 cut(s)	85, 910
Ppu21I	YACGTR	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	836
Psp1406I	AACGTT	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	520
RsaI	GTAC	3 cut(s)	339, 418, 461
RsaNI	GTAC	3 cut(s)	338, 417, 460
SaqAI	TTAA	2 cut(s)	245, 836
SatI	GCNGC	4 cut(s)	270, 549, 870, 969
Sau3AI	GATC	2 cut(s)	151, 882
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	2 cut(s)	86, 911
ScrFI	CCNGG	1 cut(s)	805
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	144, 773
SmoI	CTYRAG	2 cut(s)	144, 773
Sse9I	AATT	6 cut(s)	27, 158, 503, 634, 791, 972
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	3 cut(s)	50, 524, 618
StyD4I	CCNGG	1 cut(s)	803
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	2 cut(s)	226, 443
TaiI	ACGT	2 cut(s)	37, 343
TasI	AATT	6 cut(s)	27, 158, 503, 634, 791, 972
TatI	WGTACW	2 cut(s)	416, 459
TfiI	GAWTC	6 cut(s)	176, 213, 426, 644, 707, 958
Tru1I	TTAA	2 cut(s)	245, 836
Tru9I	TTAA	2 cut(s)	245, 836
TseFI	GTSAC	1 cut(s)	744
TseI	GCWGC	4 cut(s)	269, 548, 869, 968
Tsp45I	GTSAC	1 cut(s)	744
TspDTI	ATGAA	6 cut(s)	81, 152, 522, 702, 750, 936
Van91I	CCANNNNNTGG	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	836
XapI	RAATTY	2 cut(s)	503, 634
XceI	RCATGY	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	3 cut(s)	50, 524, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.