Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

44893985 .. 44897895

Gene Structure 3911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGAGGGAGGCAGGAGAGGCGCAAAGCAATGGGTCGTCGTCGTCGTCTTCATCCCAGGTACCTTTTATCAATTCTCAGTCCTCCTCCAATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAAGCTGGCAACAAATTGAGAATTCGGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACACAGCGAAGATGATGATGACCTGTATGACATGTTGGAATCGGCTGGTATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAATTATCATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTTTGCTTCTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTTTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTCAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTATTTTGGGTGTTGATAAGTATCTTGAAGTAGTTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGACTGCTAAAATACCTGAGGACAGAAGACAGGTACTTCTGAGAAGATTACACTCACTGCATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTATGAAGATCCTTCACCTGAGGGACGCCCAAAAGTGAAATATCCTCTAAATGGAGATACTGCTAAGAAACAAGCTGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGAGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTTTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.71

Weight (kDa)

6.12

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	611, 1074
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	3 cut(s)	756, 769, 791
AcsI	RAATTY	2 cut(s)	175, 461
AcuI	CTGAAG	1 cut(s)	944
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	4 cut(s)	63, 206, 705, 913
AfiI	CCNNNNNNNGG	2 cut(s)	839, 1029
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	8 cut(s)	110, 401, 458, 596, 619, 640, 735, 1127
AjnI	CCWGG	2 cut(s)	57, 1101
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	9 cut(s)	106, 159, 227, 361, 863, 975, 1019, 1087, 1118
AluI	AGCT	9 cut(s)	106, 159, 227, 361, 863, 975, 1019, 1087, 1118
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	176, 665, 1036
AlwI	GGATC	3 cut(s)	756, 769, 791
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	2 cut(s)	142, 1153
ApeKI	GCWGC	6 cut(s)	215, 975, 1084, 1118, 1139, 1142
ApoI	RAATTY	2 cut(s)	175, 461
Asp700I	GAANNNNTTC	1 cut(s)	105
Asp718I	GGTACC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	795, 1117
AxyI	CCTNAGG	2 cut(s)	687, 807
BamHI	GGATCC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	42, 703
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	6 cut(s)	202, 962, 1096, 1105, 1126, 1154
BccI	CCATC	3 cut(s)	124, 494, 554
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	59, 1103
BcoDI	GTCTC	3 cut(s)	176, 665, 1036
BfaI	CTAG	2 cut(s)	1070, 1115
BfmI	CTRYAG	1 cut(s)	1140
BisI	GCNGC	6 cut(s)	216, 976, 1085, 1119, 1140, 1143
BlsI	GCNGC	6 cut(s)	217, 977, 1086, 1120, 1141, 1144
Bme1390I	CCNGG	2 cut(s)	59, 1103
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	6 cut(s)	63, 136, 145, 631, 763, 908
BmrFI	CCNGG	2 cut(s)	59, 1103
BmrI	ACTGGG	2 cut(s)	146, 423
BmsI	GCATC	1 cut(s)	761
BmuI	ACTGGG	2 cut(s)	146, 423
BpiI	GAAGAC	2 cut(s)	42, 703
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu10I	CCTNAGC	2 cut(s)	479, 971
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	814
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	3 cut(s)	113, 137, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	839, 1029
Bse1I	ACTGG	3 cut(s)	152, 418, 1156
Bse21I	CCTNAGG	2 cut(s)	687, 807
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	59, 1103
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	53, 505
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	839, 1029
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	5 cut(s)	92, 678, 701, 798, 962
BseNI	ACTGG	3 cut(s)	152, 418, 1156
BseRI	GAGGAG	2 cut(s)	76, 224
BseXI	GCAGC	6 cut(s)	202, 962, 1096, 1105, 1126, 1154
BseYI	CCCAGC	1 cut(s)	625
BshFI	GGCC	2 cut(s)	144, 1155
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	3 cut(s)	114, 138, 344
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	2 cut(s)	839, 1029
BsmAI	GTCTC	3 cut(s)	176, 665, 1036
BsmFI	GGGAC	1 cut(s)	825
BsmI	GAATGC	2 cut(s)	442, 730
BsnI	GGCC	2 cut(s)	144, 1155
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	761, 796
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	144, 1155
BspCNI	CTCAG	5 cut(s)	91, 679, 702, 799, 963
BspEI	TCCGGA	1 cut(s)	137
BspLI	GGNNCC	6 cut(s)	63, 136, 145, 631, 763, 908
BspMAI	CTGCAG	1 cut(s)	1144
BspPI	GGATC	3 cut(s)	756, 769, 791
BspT107I	GGYRCC	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	152, 418, 1156
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	761, 796
BssNAI	GTATAC	1 cut(s)	612
BssNI	GRCGYC	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	59, 1103
BstACI	GRCGYC	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	161, 1089, 1153
BstDEI	CTNAG	7 cut(s)	78, 479, 687, 710, 807, 852, 971
BstENI	CCTNNNNNAGG	1 cut(s)	1027
BstF5I	GGATG	2 cut(s)	53, 505
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	764, 799
BstMAI	GTCTC	3 cut(s)	176, 665, 1036
BstMBI	GATC	2 cut(s)	761, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 224, 749, 1148
BstNI	CCWGG	2 cut(s)	59, 1103
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	57, 1101
BstSFI	CTRYAG	1 cut(s)	1140
BstV1I	GCAGC	6 cut(s)	202, 962, 1096, 1105, 1126, 1154
BstV2I	GAAGAC	2 cut(s)	42, 703
BstX2I	RGATCY	2 cut(s)	761, 796
BstXI	CCANNNNNNTGG	2 cut(s)	159, 900
BstYI	RGATCY	2 cut(s)	761, 796
BstZ17I	GTATAC	1 cut(s)	612
Bsu36I	CCTNAGG	2 cut(s)	687, 807
BsuRI	GGCC	2 cut(s)	144, 1155
BtsCI	GGATG	2 cut(s)	53, 505
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	3 cut(s)	161, 1089, 1153
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	822
CsiI	ACCWGGT	1 cut(s)	1101
Csp6I	GTAC	4 cut(s)	62, 205, 704, 912
CviAII	CATG	4 cut(s)	202, 286, 557, 894
CviQI	GTAC	4 cut(s)	62, 205, 704, 912
DdeI	CTNAG	7 cut(s)	78, 479, 687, 710, 807, 852, 971
DpnI	GATC	2 cut(s)	763, 798
DpnII	GATC	2 cut(s)	761, 796
DraI	TTTAAA	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	944
Eco81I	CCTNAGG	2 cut(s)	687, 807
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	1027
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	57, 1101
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	4 cut(s)	205, 289, 560, 897
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 462, 494
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	4 cut(s)	201, 285, 556, 893
FblI	GTMKAC	2 cut(s)	611, 1074
Fnu4HI	GCNGC	6 cut(s)	216, 976, 1085, 1119, 1140, 1143
FokI	GGATG	2 cut(s)	40, 512
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	216, 976, 1085, 1119, 1140, 1143
FspBI	CTAG	2 cut(s)	1070, 1115
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	6 cut(s)	216, 976, 1085, 1119, 1140, 1143
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	2 cut(s)	144, 1155
HapII	CCGG	3 cut(s)	114, 138, 344
HgaI	GACGC	1 cut(s)	822
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	814
Hin1II	CATG	4 cut(s)	205, 289, 560, 897
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	3 cut(s)	293, 349, 982
HpaII	CCGG	3 cut(s)	114, 138, 344
HphI	GGTGA	2 cut(s)	795, 1117
Hpy166II	GTNNAC	5 cut(s)	119, 612, 649, 1075, 1108
Hpy188I	TCNGA	7 cut(s)	181, 240, 354, 436, 711, 924, 1041
Hpy188III	TCNNGA	7 cut(s)	127, 138, 458, 467, 527, 593, 670
Hpy8I	GTNNAC	5 cut(s)	119, 612, 649, 1075, 1108
Hpy99I	CGWCG	3 cut(s)	43, 46, 49
HpyAV	CCTTC	4 cut(s)	330, 431, 775, 810
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	6 cut(s)	316, 539, 730, 1006, 1091, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 224, 749, 1148
HpyF3I	CTNAG	7 cut(s)	78, 479, 687, 710, 807, 852, 971
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	205, 289, 560, 897
HspAI	GCGC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	137
KpnI	GGTACC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	761, 796
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	6 cut(s)	202, 962, 1096, 1105, 1126, 1154
LweI	GCATC	1 cut(s)	761
MabI	ACCWGGT	1 cut(s)	1101
MaeI	CTAG	2 cut(s)	1070, 1115
MaeII	ACGT	1 cut(s)	244
MalI	GATC	2 cut(s)	763, 798
MboI	GATC	2 cut(s)	761, 796
MboII	GAAGA	7 cut(s)	16, 42, 275, 398, 708, 726, 806
MflI	RGATCY	2 cut(s)	761, 796
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	6 cut(s)	73, 168, 175, 365, 461, 735
MmeI	TCCRAC	3 cut(s)	119, 270, 467
MroI	TCCGGA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	3 cut(s)	738, 869, 1025
MspI	CCGG	3 cut(s)	114, 138, 344
MspR9I	CCNGG	2 cut(s)	59, 1103
Mva1269I	GAATGC	2 cut(s)	442, 730
MvaI	CCWGG	2 cut(s)	59, 1103
MwoI	GCNNNNNNNGC	4 cut(s)	20, 224, 749, 1148
NdeII	GATC	2 cut(s)	761, 796
NlaIII	CATG	4 cut(s)	205, 289, 560, 897
NlaIV	GGNNCC	6 cut(s)	63, 136, 145, 631, 763, 908
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PctI	GAATGC	2 cut(s)	442, 730
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	293, 349, 982
PkrI	GCNGC	6 cut(s)	217, 977, 1086, 1120, 1141, 1144
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	57, 1101
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	2 cut(s)	57, 1101
PspN4I	GGNNCC	6 cut(s)	63, 136, 145, 631, 763, 908
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	1144
PsuI	RGATCY	2 cut(s)	761, 796
RsaI	GTAC	4 cut(s)	63, 206, 705, 913
RsaNI	GTAC	4 cut(s)	62, 205, 704, 912
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	738, 869, 1025
SatI	GCNGC	6 cut(s)	216, 976, 1085, 1119, 1140, 1143
Sau3AI	GATC	2 cut(s)	761, 796
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	59, 1103
SduI	GDGCHC	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	1101
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	1 cut(s)	1140
Sse9I	AATT	6 cut(s)	73, 168, 175, 365, 461, 735
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	2 cut(s)	1070, 1115
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	57, 1101
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	126, 669, 878
TasI	AATT	6 cut(s)	73, 168, 175, 365, 461, 735
TfiI	GAWTC	3 cut(s)	293, 349, 982
Tru1I	TTAA	3 cut(s)	738, 869, 1025
Tru9I	TTAA	3 cut(s)	738, 869, 1025
TscAI	CASTG	1 cut(s)	732
TseI	GCWGC	6 cut(s)	215, 975, 1084, 1118, 1139, 1142
TspDTI	ATGAA	5 cut(s)	17, 42, 807, 1073, 1086
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	1 cut(s)	732
XagI	CCTNNNNNAGG	1 cut(s)	1027
XapI	RAATTY	2 cut(s)	175, 461
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmiI	GTMKAC	2 cut(s)	611, 1074
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	1070, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.