Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

6602737 .. 6603129

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGAGGGAGGCAGGAGAGAGACAAAGCAATGGGTCGTCATCATCTTCATCCGAAGTACCTCTTATCAATTCTCAGTCCTCCTCCCATCCAACCGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGCAACAAATTGAGAATTCCGGGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTTCTCTATTCTGAAACGTCTTTCTCAACATACCGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGGCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGTGGTTGGAGTTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.33

Weight (kDa)

4.23

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	172, 326
AfaI	GTAC	2 cut(s)	60, 203
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	107, 323
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	103, 224
AluI	AGCT	2 cut(s)	103, 224
Alw26I	GTCTC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	172, 326
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	140, 180
AsuC2I	CCSGG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	96, 121, 360
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	157, 178
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	140, 180
BmiI	GGNNCC	3 cut(s)	133, 142, 181
BmrFI	CCNGG	2 cut(s)	157, 178
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	110, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	4 cut(s)	50, 88, 268, 371
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	73, 221
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	111, 135, 177
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	134
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	133, 142, 181
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	75, 344
BstF5I	GGATG	4 cut(s)	50, 88, 268, 371
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	155, 176
BstV1I	GCAGC	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	50, 88, 268, 371
Cfr13I	GGNCC	2 cut(s)	140, 180
Csp6I	GTAC	2 cut(s)	59, 202
CviAII	CATG	2 cut(s)	199, 286
CviJI	RGCY	4 cut(s)	103, 141, 212, 224
CviKI_1	RGCY	4 cut(s)	103, 141, 212, 224
CviQI	GTAC	2 cut(s)	59, 202
DdeI	CTNAG	2 cut(s)	75, 344
Eco47I	GGWCC	1 cut(s)	180
EcoO109I	RGGNCCY	2 cut(s)	140, 180
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	202, 289
FaiI	YATR	5 cut(s)	200, 255, 282, 287, 379
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 327, 359
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	198, 285
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	4 cut(s)	37, 75, 275, 378
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	3 cut(s)	111, 135, 177
Hin1II	CATG	2 cut(s)	202, 289
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	3 cut(s)	111, 135, 177
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	55, 237
Hpy188III	TCNNGA	4 cut(s)	124, 135, 323, 332
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	75, 344
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	202, 289
Kpn2I	TCCGGA	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	8 cut(s)	124, 142, 148, 162, 169, 190, 290, 317
Lsp1109I	GCAGC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	16, 39
MluCI	AATT	4 cut(s)	70, 165, 172, 326
MmeI	TCCRAC	3 cut(s)	116, 270, 332
MnlI	CCTC	9 cut(s)	4, 72, 91, 94, 131, 199, 202, 226, 253
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	3 cut(s)	111, 135, 177
MspR9I	CCNGG	2 cut(s)	157, 178
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	178
NlaIII	CATG	2 cut(s)	202, 289
NlaIV	GGNNCC	3 cut(s)	133, 142, 181
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	180
PscI	ACATGT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	133, 142, 181
PspPI	GGNCC	2 cut(s)	140, 180
PspPPI	RGGWCCY	1 cut(s)	180
RsaI	GTAC	2 cut(s)	60, 203
RsaNI	GTAC	2 cut(s)	59, 202
SatI	GCNGC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	140, 180
ScrFI	CCNGG	2 cut(s)	157, 178
SetI	ASST	8 cut(s)	64, 105, 158, 185, 189, 226, 244, 279
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	4 cut(s)	70, 165, 172, 326
StyD4I	CCNGG	2 cut(s)	155, 176
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	70, 165, 172, 326
TfiI	GAWTC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	17, 39
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	2 cut(s)	172, 326
XceI	RCATGY	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.