Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

41133654 .. 41138044

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGAGGGAGGCAGGAGAGAGGCAAAGCAATGGGTCGTCATCGGAGGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGTGTTCCGGAGGCCCCGACCCAGTAACCTGGCAACAAATTGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATAGCGAGGATGATGATGGTGATGACCTGTATGACATGTTGGAATCCGCTGGTATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTTTGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAACAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGTTGAGGTGTACACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTATGAAGATCCTTCACCTGAGGGACGCCCAAAAGTGAAATATCCTCTAAACGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTTCCCTGGGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTGAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.61

Weight (kDa)

5.78

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	1068
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	2 cut(s)	291, 477
AclWI	GGATC	3 cut(s)	750, 763, 785
AcsI	RAATTY	2 cut(s)	163, 455
AcuI	CTGAAG	1 cut(s)	938
AcyI	GRCGYC	1 cut(s)	808
AfaI	GTAC	5 cut(s)	51, 194, 605, 699, 907
AfiI	CCNNNNNNNGG	3 cut(s)	686, 833, 1023
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	9 cut(s)	98, 395, 452, 590, 613, 634, 729, 1021, 1121
AjnI	CCWGG	3 cut(s)	146, 963, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AluBI	AGCT	6 cut(s)	94, 215, 355, 1013, 1081, 1112
AluI	AGCT	6 cut(s)	94, 215, 355, 1013, 1081, 1112
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	164, 1030
AlwI	GGATC	3 cut(s)	750, 763, 785
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	2 cut(s)	130, 1147
ApeKI	GCWGC	6 cut(s)	203, 969, 1078, 1112, 1133, 1136
ApoI	RAATTY	2 cut(s)	163, 455
Asp700I	GAANNNNTTC	2 cut(s)	93, 958
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	275, 789, 1111
AxyI	CCTNAGG	2 cut(s)	681, 801
BamHI	GGATCC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	697
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	190, 956, 1090, 1099, 1120, 1148
BccI	CCATC	3 cut(s)	254, 488, 548
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	3 cut(s)	148, 965, 1097
BcoDI	GTCTC	2 cut(s)	164, 1030
BfaI	CTAG	2 cut(s)	1064, 1109
BfmI	CTRYAG	1 cut(s)	1134
BisI	GCNGC	6 cut(s)	204, 970, 1079, 1113, 1134, 1137
BlsI	GCNGC	6 cut(s)	205, 971, 1080, 1114, 1135, 1138
Bme1390I	CCNGG	3 cut(s)	148, 965, 1097
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	5 cut(s)	51, 133, 625, 757, 902
BmrFI	CCNGG	3 cut(s)	148, 965, 1097
BmrI	ACTGGG	2 cut(s)	134, 417
BmsI	GCATC	1 cut(s)	755
BmuI	ACTGGG	2 cut(s)	134, 417
BpiI	GAAGAC	1 cut(s)	697
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	808
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	963, 964
BsaWI	WCCGGW	3 cut(s)	101, 125, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	686, 833, 1023
Bse1I	ACTGG	3 cut(s)	140, 412, 1150
Bse21I	CCTNAGG	2 cut(s)	681, 801
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	148, 965, 1097
BseDI	CCNNGG	2 cut(s)	963, 964
BseGI	GGATG	2 cut(s)	259, 499
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	686, 833, 1023
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	80, 672, 695, 792
BseNI	ACTGG	3 cut(s)	140, 412, 1150
BseRI	GAGGAG	2 cut(s)	64, 212
BseXI	GCAGC	6 cut(s)	190, 956, 1090, 1099, 1120, 1148
BseYI	CCCAGC	1 cut(s)	619
BshFI	GGCC	2 cut(s)	132, 1149
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	102, 126, 338
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	3 cut(s)	686, 833, 1023
BsmAI	GTCTC	2 cut(s)	164, 1030
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	2 cut(s)	436, 673
BsnI	GGCC	2 cut(s)	132, 1149
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	755, 790
BspACI	CCGC	2 cut(s)	291, 477
BspANI	GGCC	2 cut(s)	132, 1149
BspCNI	CTCAG	4 cut(s)	79, 673, 696, 793
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	5 cut(s)	51, 133, 625, 757, 902
BspMAI	CTGCAG	1 cut(s)	1138
BspPI	GGATC	3 cut(s)	750, 763, 785
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	140, 412, 1150
BssECI	CCNNGG	2 cut(s)	963, 964
BssMI	GATC	2 cut(s)	755, 790
BssNI	GRCGYC	1 cut(s)	808
Bst2UI	CCWGG	3 cut(s)	148, 965, 1097
Bst6I	CTCTTC	1 cut(s)	1016
BstACI	GRCGYC	1 cut(s)	808
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	1083, 1147
BstDEI	CTNAG	6 cut(s)	66, 473, 681, 704, 801, 846
BstENI	CCTNNNNNAGG	1 cut(s)	1021
BstF5I	GGATG	2 cut(s)	259, 499
BstKTI	GATC	2 cut(s)	758, 793
BstMAI	GTCTC	2 cut(s)	164, 1030
BstMBI	GATC	2 cut(s)	755, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 743, 1142
BstNI	CCWGG	3 cut(s)	148, 965, 1097
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	146, 963, 1095
BstSFI	CTRYAG	1 cut(s)	1134
BstV1I	GCAGC	6 cut(s)	190, 956, 1090, 1099, 1120, 1148
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	755, 790
BstXI	CCANNNNNNTGG	2 cut(s)	147, 894
BstYI	RGATCY	2 cut(s)	755, 790
Bsu36I	CCTNAGG	2 cut(s)	681, 801
BsuRI	GGCC	2 cut(s)	132, 1149
BtsCI	GGATG	2 cut(s)	259, 499
Cac8I	GCNNGC	2 cut(s)	1083, 1147
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	816
CsiI	ACCWGGT	1 cut(s)	1095
Csp6I	GTAC	5 cut(s)	50, 193, 604, 698, 906
CviAII	CATG	4 cut(s)	190, 280, 551, 888
CviQI	GTAC	5 cut(s)	50, 193, 604, 698, 906
DdeI	CTNAG	6 cut(s)	66, 473, 681, 704, 801, 846
DpnI	GATC	2 cut(s)	757, 792
DpnII	GATC	2 cut(s)	755, 790
DraI	TTTAAA	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	1016
EarI	CTCTTC	1 cut(s)	1016
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	938
Eco81I	CCTNAGG	2 cut(s)	681, 801
EcoICRI	GAGCTC	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	1021
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	146, 963, 1095
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	4 cut(s)	193, 283, 554, 891
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 456, 488
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	4 cut(s)	189, 279, 550, 887
FblI	GTMKAC	1 cut(s)	1068
Fnu4HI	GCNGC	6 cut(s)	204, 970, 1079, 1113, 1134, 1137
FokI	GGATG	2 cut(s)	266, 506
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	6 cut(s)	204, 970, 1079, 1113, 1134, 1137
FspBI	CTAG	2 cut(s)	1064, 1109
GluI	GCNGC	6 cut(s)	204, 970, 1079, 1113, 1134, 1137
GsaI	CCCAGC	1 cut(s)	623
HaeIII	GGCC	2 cut(s)	132, 1149
HapII	CCGG	3 cut(s)	102, 126, 338
HgaI	GACGC	1 cut(s)	816
Hin1I	GRCGYC	1 cut(s)	808
Hin1II	CATG	4 cut(s)	193, 283, 554, 891
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	287, 343, 976
HpaII	CCGG	3 cut(s)	102, 126, 338
HphI	GGTGA	3 cut(s)	275, 789, 1111
Hpy166II	GTNNAC	6 cut(s)	107, 604, 606, 643, 1069, 1102
Hpy188I	TCNGA	8 cut(s)	46, 169, 228, 348, 430, 705, 918, 1035
Hpy188III	TCNNGA	6 cut(s)	115, 126, 452, 461, 587, 664
Hpy8I	GTNNAC	6 cut(s)	107, 604, 606, 643, 1069, 1102
HpyAV	CCTTC	4 cut(s)	324, 425, 769, 804
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	310, 533, 1000, 1085, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 743, 1142
HpyF3I	CTNAG	6 cut(s)	66, 473, 681, 704, 801, 846
HpySE526I	ACGT	1 cut(s)	232
Hsp92I	GRCGYC	1 cut(s)	808
Hsp92II	CATG	4 cut(s)	193, 283, 554, 891
Kpn2I	TCCGGA	1 cut(s)	125
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	755, 790
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	6 cut(s)	190, 956, 1090, 1099, 1120, 1148
LweI	GCATC	1 cut(s)	755
MabI	ACCWGGT	1 cut(s)	1095
MaeI	CTAG	2 cut(s)	1064, 1109
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	757, 792
MboI	GATC	2 cut(s)	755, 790
MboII	GAAGA	6 cut(s)	16, 392, 702, 720, 800, 1033
MflI	RGATCY	2 cut(s)	755, 790
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	5 cut(s)	61, 156, 163, 455, 729
MmeI	TCCRAC	3 cut(s)	107, 264, 461
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	93, 958
MseI	TTAA	2 cut(s)	732, 863
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	3 cut(s)	102, 126, 338
MspR9I	CCNGG	3 cut(s)	148, 965, 1097
Mva1269I	GAATGC	2 cut(s)	436, 673
MvaI	CCWGG	3 cut(s)	148, 965, 1097
MwoI	GCNNNNNNNGC	3 cut(s)	212, 743, 1142
NdeII	GATC	2 cut(s)	755, 790
NlaIII	CATG	4 cut(s)	193, 283, 554, 891
NlaIV	GGNNCC	5 cut(s)	51, 133, 625, 757, 902
NspI	RCATGY	1 cut(s)	283
PasI	CCCWGGG	1 cut(s)	964
PciI	ACATGT	1 cut(s)	279
PctI	GAATGC	2 cut(s)	436, 673
PdmI	GAANNNNTTC	2 cut(s)	93, 958
PfeI	GAWTC	3 cut(s)	287, 343, 976
PkrI	GCNGC	6 cut(s)	205, 971, 1080, 1114, 1135, 1138
PscI	ACATGT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	146, 963, 1095
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	3 cut(s)	146, 963, 1095
PspN4I	GGNNCC	5 cut(s)	51, 133, 625, 757, 902
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	1138
PsuI	RGATCY	2 cut(s)	755, 790
RsaI	GTAC	5 cut(s)	51, 194, 605, 699, 907
RsaNI	GTAC	5 cut(s)	50, 193, 604, 698, 906
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	732, 863
SatI	GCNGC	6 cut(s)	204, 970, 1079, 1113, 1134, 1137
Sau3AI	GATC	2 cut(s)	755, 790
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	148, 965, 1097
SduI	GDGCHC	1 cut(s)	357
SexAI	ACCWGGT	1 cut(s)	1095
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	1 cut(s)	1134
Sse9I	AATT	5 cut(s)	61, 156, 163, 455, 729
SsiI	CCGC	2 cut(s)	291, 477
SspMI	CTAG	2 cut(s)	1064, 1109
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	3 cut(s)	146, 963, 1095
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	114, 663, 872
TasI	AATT	5 cut(s)	61, 156, 163, 455, 729
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	287, 343, 976
Tru1I	TTAA	2 cut(s)	732, 863
Tru9I	TTAA	2 cut(s)	732, 863
TseI	GCWGC	6 cut(s)	203, 969, 1078, 1112, 1133, 1136
TspDTI	ATGAA	4 cut(s)	17, 801, 1067, 1080
TspGWI	ACGGA	3 cut(s)	702, 849, 893
XagI	CCTNNNNNAGG	1 cut(s)	1021
XapI	RAATTY	2 cut(s)	163, 455
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XmiI	GTMKAC	1 cut(s)	1068
XmnI	GAANNNNTTC	2 cut(s)	93, 958
XspI	CTAG	2 cut(s)	1064, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.