Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

41541909 .. 41543488

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTCGTCGTCGTCTTCATCCGAGTGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAACAGCTTCAATCCGGTTCAAGTCGAGATGGGTTCCGAGGCCCCGACCCAGGAACCTGGCAACAAATCGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGTTGCCCTATTAGCTTCCTCTATTCTGAAACGTCTTTTTCAACATACTGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGAAGCGTATGGTGCTTGTGCAATCTCTAAAACAACTTGAAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGCTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.71

Weight (kDa)

4.85

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	139, 329
AfaI	GTAC	2 cut(s)	30, 170
AfiI	CCNNNNNNNGG	2 cut(s)	116, 559
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	8 cut(s)	77, 87, 218, 302, 326, 464, 487, 508
AjnI	CCWGG	2 cut(s)	115, 122
AluBI	AGCT	3 cut(s)	73, 191, 470
AluI	AGCT	3 cut(s)	73, 191, 470
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	139, 329
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	89, 362, 422
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	117, 124
BcoDI	GTCTC	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	117, 124
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	4 cut(s)	101, 109, 121, 499
BmrFI	CCNGG	2 cut(s)	117, 124
BpiI	GAAGAC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu10I	CCTNAGC	2 cut(s)	347, 471
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	103, 115, 529
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 559
Bse21I	CCTNAGG	1 cut(s)	554
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	117, 124
BseDI	CCNNGG	3 cut(s)	103, 115, 529
BseGI	GGATG	3 cut(s)	19, 235, 373
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	116, 559
BseMII	CTCAG	4 cut(s)	59, 216, 462, 545
BseRI	GAGGAG	2 cut(s)	43, 188
BseYI	CCCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	116, 559
BsmAI	GTCTC	1 cut(s)	140
BsmI	GAATGC	2 cut(s)	310, 546
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	4 cut(s)	58, 217, 463, 546
BspLI	GGNNCC	4 cut(s)	101, 109, 121, 499
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	103, 115, 529
BssNAI	GTATAC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	529
Bst1107I	GTATAC	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	117, 124
BstDEI	CTNAG	5 cut(s)	45, 225, 347, 471, 554
BstF5I	GGATG	3 cut(s)	19, 235, 373
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 274
BstNI	CCWGG	2 cut(s)	117, 124
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	115, 122
BstV2I	GAAGAC	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	19, 235, 373
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	29, 169
CviAII	CATG	3 cut(s)	166, 253, 425
CviJI	RGCY	4 cut(s)	73, 108, 191, 470
CviKI_1	RGCY	4 cut(s)	73, 108, 191, 470
CviQI	GTAC	2 cut(s)	29, 169
DdeI	CTNAG	5 cut(s)	45, 225, 347, 471, 554
Eco130I	CCWWGG	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	115, 122
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	3 cut(s)	169, 256, 428
FaiI	YATR	9 cut(s)	167, 222, 249, 254, 272, 381, 414, 426, 480
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	3 cut(s)	165, 252, 424
FblI	GTMKAC	1 cut(s)	479
FokI	GGATG	3 cut(s)	6, 242, 380
GsaI	CCCAGC	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	169, 256, 428
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	3 cut(s)	29, 480, 517
Hpy188I	TCNGA	4 cut(s)	24, 104, 145, 204
Hpy188III	TCNNGA	6 cut(s)	92, 136, 326, 335, 461, 537
Hpy8I	GTNNAC	3 cut(s)	29, 480, 517
Hpy99I	CGWCG	2 cut(s)	12, 15
HpyAV	CCTTC	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	283, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 274
HpyF3I	CTNAG	5 cut(s)	45, 225, 347, 471, 554
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	169, 256, 428
LmnI	GCTCC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	208
MboII	GAAGA	2 cut(s)	8, 314
MluCI	AATT	3 cut(s)	40, 139, 329
MmeI	TCCRAC	3 cut(s)	86, 237, 335
MroXI	GAANNNNTTC	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	2 cut(s)	117, 124
Mva1269I	GAATGC	2 cut(s)	310, 546
MvaI	CCWGG	2 cut(s)	117, 124
MwoI	GCNNNNNNNGC	2 cut(s)	188, 274
NlaIII	CATG	3 cut(s)	169, 256, 428
NlaIV	GGNNCC	4 cut(s)	101, 109, 121, 499
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	2 cut(s)	310, 546
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	115, 122
PspFI	CCCAGC	1 cut(s)	493
PspGI	CCWGG	2 cut(s)	115, 122
PspN4I	GGNNCC	4 cut(s)	101, 109, 121, 499
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	2 cut(s)	30, 170
RsaNI	GTAC	2 cut(s)	29, 169
RseI	CAYNNNNRTG	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	117, 124
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	3 cut(s)	40, 139, 329
SsiI	CCGC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	115, 122
StyI	CCWWGG	1 cut(s)	529
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	4 cut(s)	91, 135, 263, 536
TasI	AATT	3 cut(s)	40, 139, 329
TfiI	GAWTC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	8
XapI	RAATTY	2 cut(s)	139, 329
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.