Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000410.1

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

64836 .. 65640

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000410.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgaagagggaggcaggagagagacaaagcaatgggtcgtcatcatcttcatccgaagtacctcttatcaattctcagtcctcctcccatccaaccgaacagcttcaatccggttcacaagtcgagatgggttccggaggccccgacccagtaacctggcaacaaattgagaattccgggacctaccttgtctgctccatgtacgaggaggctgcctcattagctttctctattctgaaacgtctttctcaacataccgaggatgatgatgatgacctgtatgacatgttggaatcggcagaagggcattctcttgattatacaaaaagacttgatgggcattttgttttgggcattgataagtatcttgtagtagctgaggtgtatactttgaatgtgctgggaaccattttgaatagtgttgaccttgctaactcttgggtcgagaatgctaatatacctgaggacggaagacaggtaaacaattacatacatcttatgttggagacagcaccacgaaaaattgatttagatggttatatactactataccacacaacgtacctggtggatattgacagcgagaaggttggaagagtcttgaagctcgactccatcaggggcggtaacgcttggaaaggcatggacgtcctgatcttcgacacgtggcattggtcaacaagtggatgcattttgagttctcagaaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.32

Weight (kDa)

4.58

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	3 cut(s)	60, 203, 563
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflIII	ACRYGT	2 cut(s)	285, 663
AgsI	TTSAA	4 cut(s)	107, 394, 415, 604
AjnI	CCWGG	2 cut(s)	155, 564
AluBI	AGCT	4 cut(s)	103, 224, 377, 607
AluI	AGCT	4 cut(s)	103, 224, 377, 607
Alw26I	GTCTC	2 cut(s)	16, 500
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	140, 180
AsuC2I	CCSGG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	462
BbrPI	CACGTG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	478
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	5 cut(s)	96, 121, 329, 527, 623
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	157, 566
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	16, 500
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	157, 178, 566
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	140, 180
BmiI	GGNNCC	4 cut(s)	133, 142, 181, 406
BmrFI	CCNGG	3 cut(s)	157, 178, 566
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	677
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	666
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	110, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	157, 566
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	4 cut(s)	50, 88, 268, 692
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	89, 369, 453
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	73, 221
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	111, 135, 177
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	16, 500
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	2 cut(s)	307, 454
BsnI	GGCC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	654
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	88, 370, 454
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	133, 142, 181, 406
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	654
BssNAI	GTATAC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	648
Bst1107I	GTATAC	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	157, 566
Bst6I	CTCTTC	1 cut(s)	589
BstACI	GRCGYC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	666
BstDEI	CTNAG	4 cut(s)	75, 378, 462, 702
BstF5I	GGATG	4 cut(s)	50, 88, 268, 692
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	2 cut(s)	16, 500
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	157, 566
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	3 cut(s)	155, 176, 564
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	50, 88, 268, 692
Cfr13I	GGNCC	2 cut(s)	140, 180
CsiI	ACCWGGT	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	59, 202, 562
CviAII	CATG	3 cut(s)	199, 286, 643
CviJI	RGCY	6 cut(s)	103, 141, 212, 224, 377, 607
CviKI_1	RGCY	6 cut(s)	103, 141, 212, 224, 377, 607
CviQI	GTAC	3 cut(s)	59, 202, 562
DdeI	CTNAG	4 cut(s)	75, 378, 462, 702
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	2 cut(s)	140, 180
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	155, 564
EcoT22I	ATGCAT	1 cut(s)	692
FaeI	CATG	3 cut(s)	202, 289, 646
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	198, 285, 642
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	4 cut(s)	37, 75, 275, 699
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	3 cut(s)	111, 135, 177
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	3 cut(s)	202, 289, 646
HincII	GTYRAC	2 cut(s)	424, 678
HindII	GTYRAC	2 cut(s)	424, 678
HinfI	GANTC	3 cut(s)	293, 597, 611
HpaII	CCGG	3 cut(s)	111, 135, 177
Hpy166II	GTNNAC	5 cut(s)	116, 387, 424, 481, 678
Hpy188I	TCNGA	3 cut(s)	55, 237, 705
Hpy188III	TCNNGA	6 cut(s)	124, 135, 314, 445, 601, 652
Hpy8I	GTNNAC	5 cut(s)	116, 387, 424, 481, 678
HpyAV	CCTTC	2 cut(s)	296, 580
HpyCH4IV	ACGT	4 cut(s)	241, 560, 648, 665
HpyCH4V	TGCA	1 cut(s)	690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	75, 378, 462, 702
HpySE526I	ACGT	4 cut(s)	241, 560, 648, 665
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	3 cut(s)	202, 289, 646
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	677
MabI	ACCWGGT	1 cut(s)	564
MaeII	ACGT	4 cut(s)	241, 560, 648, 665
MaeIII	GTNAC	2 cut(s)	151, 626
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	5 cut(s)	16, 39, 483, 606, 649
MluCI	AATT	5 cut(s)	70, 165, 172, 484, 522
MlyI	GAGTC	2 cut(s)	605, 606
MmeI	TCCRAC	4 cut(s)	116, 270, 483, 571
Mph1103I	ATGCAT	1 cut(s)	692
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	3 cut(s)	111, 135, 177
MspR9I	CCNGG	3 cut(s)	157, 178, 566
Mva1269I	GAATGC	2 cut(s)	307, 454
MvaI	CCWGG	2 cut(s)	157, 566
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	3 cut(s)	202, 289, 646
NlaIV	GGNNCC	4 cut(s)	133, 142, 181, 406
NsiI	ATGCAT	1 cut(s)	692
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	2 cut(s)	307, 454
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	605, 605
PmaCI	CACGTG	1 cut(s)	666
PmlI	CACGTG	1 cut(s)	666
PpsI	GAGTC	2 cut(s)	605, 605
Ppu21I	YACGTR	1 cut(s)	666
PpuMI	RGGWCCY	1 cut(s)	180
PscI	ACATGT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	155, 564
PspCI	CACGTG	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	155, 564
PspN4I	GGNNCC	4 cut(s)	133, 142, 181, 406
PspPI	GGNCC	2 cut(s)	140, 180
PspPPI	RGGWCCY	1 cut(s)	180
RsaI	GTAC	3 cut(s)	60, 203, 563
RsaNI	GTAC	3 cut(s)	59, 202, 562
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	2 cut(s)	140, 180
SchI	GAGTC	2 cut(s)	605, 606
ScrFI	CCNGG	3 cut(s)	157, 178, 566
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	677
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	5 cut(s)	70, 165, 172, 484, 522
SsiI	CCGC	1 cut(s)	624
StyD4I	CCNGG	3 cut(s)	155, 176, 564
TaiI	ACGT	4 cut(s)	244, 563, 651, 668
TaqI	TCGA	4 cut(s)	123, 444, 609, 660
TasI	AATT	5 cut(s)	70, 165, 172, 484, 522
TfiI	GAWTC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	17, 39
TspGWI	ACGGA	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	649
Zsp2I	ATGCAT	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.