Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

29008215 .. 29008804

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGGTGGAAGTGAAGAATGAAGAGGGAGGCGAGGAGAGAGACAAAGCAATGGGTCGTCATCATCTTCATCCGAAGTACCTCTTATCAATTCTCGATCCTCCTCCCATCCAACCCGAACGACTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAAGAACACGGCAACAAATTGAGAATTCGGGACCTACCTTGTCTGCTCCATGGCATTCTCTTGGTATTCAAGAATTTCGGAAGTGTTCCTTAGAGGTTGGAGTTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGCATTGATAAGTATCTTGTAGTAGCCGAGGTGTATACTTTGAATGTCTTGGGAACCATTTTGAATAATGTTGACCTTGCTAACTCTTGGGTCGAGAATGCTAAAATACCCGAGGACGGAAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.0

Weight (kDa)

5.34

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	155
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	193, 242
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	128, 239, 400, 421
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	155
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	193, 242
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	161, 200
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	200
BccI	CCATC	4 cut(s)	116, 142, 275, 335
BceAI	ACGGC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	161, 200
BmiI	GGNNCC	4 cut(s)	154, 163, 201, 412
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	218, 384, 468
BsaWI	WCCGGW	2 cut(s)	131, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	218, 384, 468
BseGI	GGATG	3 cut(s)	70, 108, 286
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	57
BseRI	GAGGAG	2 cut(s)	50, 93
BshFI	GGCC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	132, 156
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	223, 460
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	467
Bsp13I	TCCGGA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	218
BspANI	GGCC	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	155
BspLI	GGNNCC	4 cut(s)	154, 163, 201, 412
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	218, 384, 468
BssMI	GATC	1 cut(s)	97
BssNAI	GTATAC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	218
Bst1107I	GTATAC	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	70, 108, 286
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	97
BstZ17I	GTATAC	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	70, 108, 286
Cfr13I	GGNCC	2 cut(s)	161, 200
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	219, 338
CviJI	RGCY	2 cut(s)	162, 383
CviKI_1	RGCY	2 cut(s)	162, 383
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	467
EcoO109I	RGGNCCY	2 cut(s)	161, 200
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	222, 341
FaiI	YATR	5 cut(s)	220, 294, 327, 339, 393
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 242, 274
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	218, 337
FblI	GTMKAC	1 cut(s)	392
FokI	GGATG	3 cut(s)	57, 95, 293
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	132, 156
Hin1II	CATG	2 cut(s)	222, 341
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	132, 156
Hpy166II	GTNNAC	3 cut(s)	137, 393, 430
Hpy188I	TCNGA	2 cut(s)	75, 249
Hpy188III	TCNNGA	6 cut(s)	95, 145, 156, 198, 239, 451
Hpy8I	GTNNAC	3 cut(s)	137, 393, 430
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	2 cut(s)	222, 341
Kpn2I	TCCGGA	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	145, 169
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	3 cut(s)	28, 35, 59
MluCI	AATT	4 cut(s)	90, 186, 193, 242
MmeI	TCCRAC	2 cut(s)	136, 247
MroI	TCCGGA	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	123
MspI	CCGG	2 cut(s)	132, 156
Mva1269I	GAATGC	2 cut(s)	223, 460
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	222, 341
NlaIV	GGNNCC	4 cut(s)	154, 163, 201, 412
NmeAIII	GCCGAG	1 cut(s)	409
PctI	GAATGC	2 cut(s)	223, 460
PdmI	GAANNNNTTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	154, 163, 201, 412
PspPI	GGNCC	2 cut(s)	161, 200
PspPPI	RGGWCCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	161, 200
SetI	ASST	7 cut(s)	9, 84, 205, 209, 267, 390, 435
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	4 cut(s)	90, 186, 193, 242
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	483
TaqI	TCGA	3 cut(s)	96, 144, 450
TasI	AATT	4 cut(s)	90, 186, 193, 242
TspDTI	ATGAA	2 cut(s)	36, 59
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	193, 242
XmiI	GTMKAC	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.