Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

20627325 .. 20631762

Gene Structure 4438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26940.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTTCCAGAGGCCTCGACCCAGTTACCTGGGAACAAATTGAGACTTCCGAGAGCTACCTTGTGTGCTCCATGTACGAGGAGGCAGCCTCATTAGCTTCGTCTATTCTGAAACGTCTTTCGGAACATGGTCAAGACTTTGATGAACATTTGGATTTGTATGACATGTTGGAATCCGCTGGTATGGTGCTTGTGCAATCTTCGAAACAACTCGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTATTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTATGCTTTTATATTTCAGAAGGGCATTATCTTGGTATTCGGGAATTGCTGGAAGTGTTCCTTAGTGGATGGAATCTTGTAGGTGGAAAATATTATGTTCTTGTTGGTAAAGAAGACAGTGCAGATTATACACAAAGTTATAATGGCAATTTTGTTTTGGGAGTTGATAAGTATCTAGAAGTAGTTGAGGTGTATACTGTGAATCTGCTGGGAACCATATTGAATGATGTCGATCTTGCAACCTCTTGGGTAAGGAATGCTAAAATACCGGAGGACAGAAGACAGGTACTTTTAAGAAGATTACACTCGCTGCATTCAATTAAAGCCACCAATGCATCACAACAGAACTACGAAGATTTGTCACCTGAGGGACGCTCAAAAGCGAAATACCCTCTAAACAGAGATCCTGCTAAAAAACAAGCAGTATTAAACTTGTCTAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACCCTGAAGTTTGGGAATACTCGAATGGTATTATCTAATGGAAAGATTGCCCTGGGCTTCTTGATTTTGCTCGTATCTTATGTTTTGCAGAGAAAACGAGCTACCTTGAAGAGGATTGTTCAGAAACAAGCTATGTCAATGAAAAATGCCCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAAGTGAATCCTTTAGCTGCTGTTCAACCACTGGCTGCTGCAGCAAGGTCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

38.02

Weight (kDa)

8.57

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccI	GTMKAC	2 cut(s)	491, 930
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	800
AfaI	GTAC	3 cut(s)	77, 585, 769
AfiI	CCNNNNNNNGG	1 cut(s)	885
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	281, 520, 615, 883, 983
AjnI	CCWGG	2 cut(s)	29, 825
AluBI	AGCT	7 cut(s)	57, 98, 241, 875, 905, 943, 974
AluI	AGCT	7 cut(s)	57, 98, 241, 875, 905, 943, 974
Alw21I	GWGCWC	2 cut(s)	71, 243
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	2 cut(s)	13, 1009
ApeKI	GCWGC	7 cut(s)	86, 607, 940, 974, 992, 995, 998
AsuHPI	GGTGA	1 cut(s)	651
AsuII	TTCGAA	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	2 cut(s)	417, 583
Bbv12I	GWGCWC	2 cut(s)	71, 243
BbvI	GCAGC	7 cut(s)	98, 594, 952, 961, 979, 982, 1010
BccI	CCATC	1 cut(s)	360
BciT130I	CCWGG	2 cut(s)	31, 827
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	473, 926
BfmI	CTRYAG	1 cut(s)	996
BisI	GCNGC	7 cut(s)	87, 608, 941, 975, 993, 996, 999
BlsI	GCNGC	7 cut(s)	88, 609, 942, 976, 994, 997, 1000
Bme1390I	CCNGG	2 cut(s)	31, 827
BmiI	GGNNCC	3 cut(s)	7, 511, 764
BmrFI	CCNGG	2 cut(s)	31, 827
BmrI	ACTGGG	2 cut(s)	17, 303
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	2 cut(s)	17, 303
BpiI	GAAGAC	2 cut(s)	417, 583
BplI	GAGNNNNNCTC	4 cut(s)	74, 106, 656, 688
Bpu14I	TTCGAA	1 cut(s)	203
BsaBI	GATNNNNATC	2 cut(s)	468, 528
BsaJI	CCNNGG	3 cut(s)	30, 825, 826
BsaWI	WCCGGW	2 cut(s)	223, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	885
Bse1I	ACTGG	4 cut(s)	23, 298, 993, 1012
Bse21I	CCTNAGG	1 cut(s)	663
Bse8I	GATNNNNATC	2 cut(s)	468, 528
BseBI	CCWGG	2 cut(s)	31, 827
BseDI	CCNNGG	3 cut(s)	30, 825, 826
BseGI	GGATG	1 cut(s)	371
BseJI	GATNNNNATC	2 cut(s)	468, 528
BseLI	CCNNNNNNNGG	1 cut(s)	885
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	4 cut(s)	23, 298, 993, 1012
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	7 cut(s)	98, 594, 952, 961, 979, 982, 1010
BseYI	CCCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	15, 1011
BsiHKAI	GWGCWC	2 cut(s)	71, 243
BsiSI	CCGG	2 cut(s)	224, 566
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	885
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	681
BsmI	GAATGC	2 cut(s)	559, 610
BsnI	GGCC	2 cut(s)	15, 1011
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	71, 243
Bsp143I	GATC	2 cut(s)	529, 700
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	15, 1011
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	3 cut(s)	7, 511, 764
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	1 cut(s)	695
BspT104I	TTCGAA	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	23, 298, 993, 1012
BssECI	CCNNGG	3 cut(s)	30, 825, 826
BssMI	GATC	2 cut(s)	529, 700
BssNAI	GTATAC	1 cut(s)	492
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	31, 827
Bst4CI	ACNGT	2 cut(s)	416, 496
Bst6I	CTCTTC	1 cut(s)	878
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	945
BstDEI	CTNAG	2 cut(s)	359, 663
BstENI	CCTNNNNNAGG	1 cut(s)	883
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	2 cut(s)	532, 703
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	529, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 629, 998
BstNI	CCWGG	2 cut(s)	31, 827
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	29, 825
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	7 cut(s)	98, 594, 952, 961, 979, 982, 1010
BstV2I	GAAGAC	2 cut(s)	417, 583
BstX2I	RGATCY	1 cut(s)	700
BstXI	CCANNNNNNTGG	2 cut(s)	30, 756
BstYI	RGATCY	1 cut(s)	700
BstZ17I	GTATAC	1 cut(s)	492
Bsu36I	CCTNAGG	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	15, 1011
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	2 cut(s)	421, 986
Cac8I	GCNNGC	1 cut(s)	945
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	76, 584, 768
CviAII	CATG	4 cut(s)	73, 128, 166, 750
CviQI	GTAC	3 cut(s)	76, 584, 768
DdeI	CTNAG	2 cut(s)	359, 663
DpnI	GATC	2 cut(s)	531, 702
DpnII	GATC	2 cut(s)	529, 700
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Ecl136II	GAGCTC	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	800
Eco81I	CCTNAGG	1 cut(s)	663
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	29, 825
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	4 cut(s)	76, 131, 169, 753
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 342, 374
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	4 cut(s)	72, 127, 165, 749
FblI	GTMKAC	2 cut(s)	491, 930
Fnu4HI	GCNGC	7 cut(s)	87, 608, 941, 975, 993, 996, 999
FokI	GGATG	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	7 cut(s)	87, 608, 941, 975, 993, 996, 999
FspBI	CTAG	2 cut(s)	473, 926
GluI	GCNGC	7 cut(s)	87, 608, 941, 975, 993, 996, 999
GsaI	CCCAGC	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	15, 1011
HapII	CCGG	2 cut(s)	224, 566
HgaI	GACGC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	76, 131, 169, 753
HinfI	GANTC	5 cut(s)	173, 229, 370, 499, 964
HpaII	CCGG	2 cut(s)	224, 566
HphI	GGTGA	1 cut(s)	651
Hpy166II	GTNNAC	2 cut(s)	492, 931
Hpy188I	TCNGA	7 cut(s)	52, 111, 124, 215, 234, 316, 897
Hpy188III	TCNNGA	5 cut(s)	9, 134, 338, 473, 835
Hpy8I	GTNNAC	2 cut(s)	492, 931
HpyAV	CCTTC	2 cut(s)	210, 311
HpyCH4III	ACNGT	2 cut(s)	416, 496
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	8 cut(s)	196, 419, 536, 610, 632, 862, 947, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 629, 998
HpyF3I	CTNAG	2 cut(s)	359, 663
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	76, 131, 169, 753
Kzo9I	GATC	2 cut(s)	529, 700
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	7 cut(s)	98, 594, 952, 961, 979, 982, 1010
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	2 cut(s)	473, 926
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	25, 657
MalI	GATC	2 cut(s)	531, 702
MboI	GATC	2 cut(s)	529, 700
MboII	GAAGA	7 cut(s)	192, 278, 422, 588, 606, 662, 895
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	2 cut(s)	71, 243
MluCI	AATT	4 cut(s)	39, 341, 445, 615
MmeI	TCCRAC	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	3 cut(s)	590, 618, 725
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	224, 566
MspR9I	CCNGG	2 cut(s)	31, 827
Mva1269I	GAATGC	2 cut(s)	559, 610
MvaI	CCWGG	2 cut(s)	31, 827
MwoI	GCNNNNNNNGC	3 cut(s)	95, 629, 998
NdeII	GATC	2 cut(s)	529, 700
NlaIII	CATG	4 cut(s)	76, 131, 169, 753
NlaIV	GGNNCC	3 cut(s)	7, 511, 764
NmuCI	GTSAC	1 cut(s)	657
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	203
PasI	CCCWGGG	1 cut(s)	826
PceI	AGGCCT	1 cut(s)	15
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	2 cut(s)	559, 610
PfeI	GAWTC	5 cut(s)	173, 229, 370, 499, 964
PkrI	GCNGC	7 cut(s)	88, 609, 942, 976, 994, 997, 1000
PscI	ACATGT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	29, 825
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	2 cut(s)	29, 825
PspN4I	GGNNCC	3 cut(s)	7, 511, 764
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	3 cut(s)	77, 585, 769
RsaNI	GTAC	3 cut(s)	76, 584, 768
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	590, 618, 725
SatI	GCNGC	7 cut(s)	87, 608, 941, 975, 993, 996, 999
Sau3AI	GATC	2 cut(s)	529, 700
ScrFI	CCNGG	2 cut(s)	31, 827
SduI	GDGCHC	2 cut(s)	71, 243
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	996
SfuI	TTCGAA	1 cut(s)	203
Sse9I	AATT	4 cut(s)	39, 341, 445, 615
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	2 cut(s)	473, 926
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	29, 825
TaaI	ACNGT	2 cut(s)	416, 496
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	4 cut(s)	18, 203, 528, 796
TasI	AATT	4 cut(s)	39, 341, 445, 615
TfiI	GAWTC	5 cut(s)	173, 229, 370, 499, 964
Tru1I	TTAA	3 cut(s)	590, 618, 725
Tru9I	TTAA	3 cut(s)	590, 618, 725
TscAI	CASTG	2 cut(s)	421, 993
TseFI	GTSAC	1 cut(s)	657
TseI	GCWGC	7 cut(s)	86, 607, 940, 974, 992, 995, 998
Tsp45I	GTSAC	1 cut(s)	657
TspDTI	ATGAA	3 cut(s)	159, 929, 942
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	2 cut(s)	421, 993
XagI	CCTNNNNNAGG	1 cut(s)	883
XbaI	TCTAGA	1 cut(s)	472
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmiI	GTMKAC	2 cut(s)	491, 930
XspI	CTAG	2 cut(s)	473, 926
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.