Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000180

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

604173 .. 604995

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_180G00433540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGGTGGAAGTGAAGAATGAAGAGGGAGGCAGGAGAGAGACAAAGCAATGGGTCGTCATCATCTTCATCCGAACTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGAGGCCCCGACCCAGTAACCTGGCAACAAATTGAGAATTCCGGGACCTACCATGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATACCGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGGCAGAAGGGCATTCTCTTGCGGTTGGAGTTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGCATTGATAAGTATCTTGTAGTAGCTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATAATGTTGACCTTGCTAACTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACGGGTAAACAATTACATACATCTTATGTTGGAGACAGCACCACGAAAAATTGATTTAGGTGGTTATATACTACTATACCACACAACGTACCTGGTGGATATTGACAGCGAGAAGGTTGGAAGAGTTTTGAAGCTCGACTCCATCAGGGGCGGTAACGCTTGGAAAGGCATGGACGTCCTGATCTTCGACACGTGGCATTGGTCAACAAGTGGATGCATTTTGAGTTCTCAGAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.13

Weight (kDa)

5.18

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	192 - 241	5.1e-06	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	2 cut(s)	290, 657
AcsI	RAATTY	1 cut(s)	145
AcvI	CACGTG	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	681
AfaI	GTAC	2 cut(s)	176, 596
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	258, 696
AgsI	TTSAA	4 cut(s)	81, 427, 448, 637
AjnI	CCWGG	2 cut(s)	128, 597
AluBI	AGCT	3 cut(s)	197, 410, 640
AluI	AGCT	3 cut(s)	197, 410, 640
Alw26I	GTCTC	2 cut(s)	35, 533
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	113, 153
AsuC2I	CCSGG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	495
BbrPI	CACGTG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	511
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	4 cut(s)	95, 302, 362, 656
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	2 cut(s)	130, 599
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	35, 533
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	130, 151, 599
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	113, 153
BmiI	GGNNCC	4 cut(s)	107, 115, 154, 439
BmrFI	CCNGG	3 cut(s)	130, 151, 599
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	710
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	511
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	109, 231
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	122
Bse21I	CCTNAGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	130, 599
BseDI	CCNNGG	2 cut(s)	109, 231
BseGI	GGATG	4 cut(s)	69, 241, 313, 725
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	402, 486
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	172
BseYI	CCCAGC	1 cut(s)	433
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	85, 150
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	35, 533
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	280, 487
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	687
BspACI	CCGC	2 cut(s)	290, 657
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	403, 487
BspLI	GGNNCC	4 cut(s)	107, 115, 154, 439
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	109, 231
BssMI	GATC	1 cut(s)	687
BssNAI	GTATAC	1 cut(s)	420
BssNI	GRCGYC	1 cut(s)	681
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	130, 599
Bst6I	CTCTTC	2 cut(s)	18, 622
BstACI	GRCGYC	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	699
BstDEI	CTNAG	3 cut(s)	411, 495, 735
BstF5I	GGATG	4 cut(s)	69, 241, 313, 725
BstKTI	GATC	1 cut(s)	690
BstMAI	GTCTC	2 cut(s)	35, 533
BstMBI	GATC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	130, 599
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	128, 149, 597
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstZ17I	GTATAC	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	69, 241, 313, 725
Cfr13I	GGNCC	2 cut(s)	113, 153
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	175, 595
CviAII	CATG	5 cut(s)	161, 172, 259, 365, 676
CviJI	RGCY	5 cut(s)	114, 185, 197, 410, 640
CviKI_1	RGCY	5 cut(s)	114, 185, 197, 410, 640
CviQI	GTAC	2 cut(s)	175, 595
DdeI	CTNAG	3 cut(s)	411, 495, 735
DpnI	GATC	1 cut(s)	689
DpnII	GATC	1 cut(s)	687
Eam1104I	CTCTTC	2 cut(s)	18, 622
EarI	CTCTTC	2 cut(s)	18, 622
Eco47I	GGWCC	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	2 cut(s)	113, 153
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	128, 597
EcoT22I	ATGCAT	1 cut(s)	725
FaeI	CATG	5 cut(s)	164, 175, 262, 368, 679
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	5 cut(s)	160, 171, 258, 364, 675
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	4 cut(s)	56, 248, 320, 732
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	85, 150
Hin1I	GRCGYC	1 cut(s)	681
Hin1II	CATG	5 cut(s)	164, 175, 262, 368, 679
HincII	GTYRAC	2 cut(s)	457, 711
HindII	GTYRAC	2 cut(s)	457, 711
HinfI	GANTC	2 cut(s)	266, 644
HpaII	CCGG	2 cut(s)	85, 150
Hpy166II	GTNNAC	5 cut(s)	90, 420, 457, 514, 711
Hpy188I	TCNGA	4 cut(s)	74, 110, 210, 738
Hpy188III	TCNNGA	3 cut(s)	98, 478, 685
Hpy8I	GTNNAC	5 cut(s)	90, 420, 457, 514, 711
HpyAV	CCTTC	2 cut(s)	269, 613
HpyCH4IV	ACGT	4 cut(s)	214, 593, 681, 698
HpyCH4V	TGCA	2 cut(s)	347, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	411, 495, 735
HpySE526I	ACGT	4 cut(s)	214, 593, 681, 698
Hsp92I	GRCGYC	1 cut(s)	681
Hsp92II	CATG	5 cut(s)	164, 175, 262, 368, 679
Kzo9I	GATC	1 cut(s)	687
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	710
MabI	ACCWGGT	1 cut(s)	597
MaeII	ACGT	4 cut(s)	214, 593, 681, 698
MaeIII	GTNAC	2 cut(s)	124, 659
MalI	GATC	1 cut(s)	689
MboI	GATC	1 cut(s)	687
MboII	GAAGA	6 cut(s)	28, 35, 58, 516, 639, 682
MluCI	AATT	4 cut(s)	138, 145, 517, 555
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	4 cut(s)	243, 274, 516, 604
Mph1103I	ATGCAT	1 cut(s)	725
MspI	CCGG	2 cut(s)	85, 150
MspR9I	CCNGG	3 cut(s)	130, 151, 599
Mva1269I	GAATGC	2 cut(s)	280, 487
MvaI	CCWGG	2 cut(s)	130, 599
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	687
NlaIII	CATG	5 cut(s)	164, 175, 262, 368, 679
NlaIV	GGNNCC	4 cut(s)	107, 115, 154, 439
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	1 cut(s)	262
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	2 cut(s)	280, 487
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	638
PmaCI	CACGTG	1 cut(s)	699
PmlI	CACGTG	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	699
PpuMI	RGGWCCY	1 cut(s)	153
PscI	ACATGT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	128, 597
PspCI	CACGTG	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	128, 597
PspN4I	GGNNCC	4 cut(s)	107, 115, 154, 439
PspPI	GGNCC	2 cut(s)	113, 153
PspPPI	RGGWCCY	1 cut(s)	153
RsaI	GTAC	2 cut(s)	176, 596
RsaNI	GTAC	2 cut(s)	175, 595
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	687
Sau96I	GGNCC	2 cut(s)	113, 153
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	3 cut(s)	130, 151, 599
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	1 cut(s)	710
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	4 cut(s)	138, 145, 517, 555
SsiI	CCGC	2 cut(s)	290, 657
StyD4I	CCNGG	3 cut(s)	128, 149, 597
TaiI	ACGT	4 cut(s)	217, 596, 684, 701
TaqI	TCGA	4 cut(s)	97, 477, 642, 693
TasI	AATT	4 cut(s)	138, 145, 517, 555
TfiI	GAWTC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	36, 58
TspGWI	ACGGA	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	419
ZraI	GACGTC	1 cut(s)	682
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.