Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

37618901 .. 37622378

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAAGAGGGAGGCAGGAGAGAGACAAAGCAATGGGTCATCGTCATCTTCATCCGAAGTACCTCTTATCAATTCTCAGTCCTCCTCCCATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGCAACAAATTGAGAATTCCGGGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATACCGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGGCAGGTATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCACCATTCCTGCAATCCCTGTTCAAGTTCTTCTTCCTGGGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTTGTGGATGGCAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGCATTGATAAGTATCTTGTAGTAGCTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATAATGTTGACCTTGCTACCGCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTAAACAATTACATACATCTTATGTTGGAGACAGCACCACGAAAAATTGATTTAGGTGGTTATATACTACTATACCACACAACGTACCTGGTGGATATTGACAGCGAGAAGGTTGGAAGAGTCTTGAAGCTCGACTCCATCAGGGGCGGTAACGCCTGGAAAGGCATGGACGTCCTGATCTTCGACACGTGGCATTGGTCAACAAGTGGATGCATTTTGAGTTCTCAGAAAGTGGTTGTGCACAAACTTCTTTTATTTTCATTAGAAGATCCTCAAAGGAAAATCTATACAGCAATTAGTATGGCTGTATCATTAATAGCAAGTTATGATTGGCCGGACTTATTACCATATCTAATGAAGTTGAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

38.95

Weight (kDa)

5.22

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	250 - 309	1.2e-06	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	858
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	593
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	3 cut(s)	464, 642, 831
AclWI	GGATC	1 cut(s)	947
AcoI	YGGCCR	1 cut(s)	1016
AcsI	RAATTY	2 cut(s)	172, 442
AcvI	CACGTG	1 cut(s)	873
AcyI	GRCGYC	1 cut(s)	855
AfaI	GTAC	3 cut(s)	60, 203, 770
AfiI	CCNNNNNNNGG	2 cut(s)	419, 674
AflIII	ACRYGT	2 cut(s)	285, 870
AgsI	TTSAA	7 cut(s)	107, 401, 439, 601, 622, 811, 1048
AjnI	CCWGG	4 cut(s)	155, 412, 771, 839
AluBI	AGCT	5 cut(s)	103, 224, 361, 584, 814
AluI	AGCT	5 cut(s)	103, 224, 361, 584, 814
Alw21I	GWGCWC	2 cut(s)	363, 927
Alw26I	GTCTC	2 cut(s)	16, 707
Alw44I	GTGCAC	1 cut(s)	923
AlwI	GGATC	1 cut(s)	947
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	2 cut(s)	139, 1016
ApaLI	GTGCAC	1 cut(s)	923
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	172, 442
AseI	ATTAAT	1 cut(s)	998
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	140, 180
AsuC2I	CCSGG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	2 cut(s)	363, 927
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	5 cut(s)	96, 121, 476, 536, 830
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	4 cut(s)	157, 414, 773, 841
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	16, 707
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	5 cut(s)	157, 178, 414, 773, 841
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	140, 180
BmiI	GGNNCC	4 cut(s)	133, 142, 181, 613
BmrFI	CCNGG	5 cut(s)	157, 178, 414, 773, 841
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	884
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	685
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	2 cut(s)	460, 585
BpuMI	CCSGG	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	855
BsaJI	CCNNGG	2 cut(s)	258, 413
BsaWI	WCCGGW	3 cut(s)	110, 134, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 674
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	669
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	4 cut(s)	157, 414, 773, 841
BseDI	CCNNGG	2 cut(s)	258, 413
BseGI	GGATG	5 cut(s)	50, 88, 268, 487, 899
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	419, 674
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	89, 576, 660, 923
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	73, 221
BseSI	GKGCMC	1 cut(s)	927
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	607
BshFI	GGCC	2 cut(s)	141, 1018
BsiHKAI	GWGCWC	2 cut(s)	363, 927
BsiSI	CCGG	5 cut(s)	111, 135, 177, 344, 1019
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	419, 674
BsmAI	GTCTC	2 cut(s)	16, 707
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	2 cut(s)	423, 661
BsnI	GGCC	2 cut(s)	141, 1018
Bsp1286I	GDGCHC	2 cut(s)	363, 927
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	861, 952
BspACI	CCGC	3 cut(s)	464, 642, 831
BspANI	GGCC	2 cut(s)	141, 1018
BspCNI	CTCAG	4 cut(s)	88, 577, 661, 922
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	133, 142, 181, 613
BspMI	ACCTGC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	258, 413
BssMI	GATC	2 cut(s)	861, 952
BssNAI	GTATAC	1 cut(s)	594
BssNI	GRCGYC	1 cut(s)	855
Bst1107I	GTATAC	1 cut(s)	594
Bst2UI	CCWGG	4 cut(s)	157, 414, 773, 841
Bst6I	CTCTTC	1 cut(s)	796
BstACI	GRCGYC	1 cut(s)	855
BstBAI	YACGTR	1 cut(s)	873
BstDEI	CTNAG	5 cut(s)	75, 460, 585, 669, 909
BstF5I	GGATG	5 cut(s)	50, 88, 268, 487, 899
BstKTI	GATC	2 cut(s)	864, 955
BstMAI	GTCTC	2 cut(s)	16, 707
BstMBI	GATC	2 cut(s)	861, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	4 cut(s)	157, 414, 773, 841
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	5 cut(s)	155, 176, 412, 771, 839
BstSLI	GKGCMC	1 cut(s)	927
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	952
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	952
BstZ17I	GTATAC	1 cut(s)	594
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	141, 1018
BtsCI	GGATG	5 cut(s)	50, 88, 268, 487, 899
BveI	ACCTGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	140, 180
CsiI	ACCWGGT	1 cut(s)	771
Csp6I	GTAC	3 cut(s)	59, 202, 769
CviAII	CATG	4 cut(s)	199, 286, 539, 850
CviJI	RGCY	9 cut(s)	103, 141, 212, 224, 361, 584, 814, 989, 1018
CviKI_1	RGCY	9 cut(s)	103, 141, 212, 224, 361, 584, 814, 989, 1018
CviQI	GTAC	3 cut(s)	59, 202, 769
DdeI	CTNAG	5 cut(s)	75, 460, 585, 669, 909
DpnI	GATC	2 cut(s)	863, 954
DpnII	GATC	2 cut(s)	861, 952
EaeI	YGGCCR	1 cut(s)	1016
Eam1104I	CTCTTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	796
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	361
Eco72I	CACGTG	1 cut(s)	873
Eco81I	CCTNAGG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	2 cut(s)	140, 180
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	4 cut(s)	155, 412, 771, 839
EcoT22I	ATGCAT	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	4 cut(s)	202, 289, 542, 853
FalI	AAGNNNNNCTT	6 cut(s)	48, 80, 393, 425, 443, 475
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	4 cut(s)	198, 285, 538, 849
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	5 cut(s)	37, 75, 275, 494, 906
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	141, 1018
HapII	CCGG	5 cut(s)	111, 135, 177, 344, 1019
Hin1I	GRCGYC	1 cut(s)	855
Hin1II	CATG	4 cut(s)	202, 289, 542, 853
HincII	GTYRAC	2 cut(s)	631, 885
HindII	GTYRAC	2 cut(s)	631, 885
HinfI	GANTC	4 cut(s)	293, 349, 804, 818
HpaII	CCGG	5 cut(s)	111, 135, 177, 344, 1019
Hpy166II	GTNNAC	6 cut(s)	116, 594, 631, 688, 885, 925
Hpy188I	TCNGA	4 cut(s)	55, 237, 354, 912
Hpy188III	TCNNGA	7 cut(s)	124, 135, 439, 448, 652, 808, 859
Hpy8I	GTNNAC	6 cut(s)	116, 594, 631, 688, 885, 925
HpyAV	CCTTC	3 cut(s)	330, 412, 787
HpyCH4IV	ACGT	4 cut(s)	241, 767, 855, 872
HpyCH4V	TGCA	5 cut(s)	316, 389, 521, 897, 925
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	5 cut(s)	75, 460, 585, 669, 909
HpySE526I	ACGT	4 cut(s)	241, 767, 855, 872
Hsp92I	GRCGYC	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	202, 289, 542, 853
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	861, 952
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	884
MabI	ACCWGGT	1 cut(s)	771
MaeII	ACGT	4 cut(s)	241, 767, 855, 872
MaeIII	GTNAC	2 cut(s)	151, 833
MalI	GATC	2 cut(s)	863, 954
MboI	GATC	2 cut(s)	861, 952
MboII	GAAGA	8 cut(s)	16, 39, 398, 401, 690, 813, 856, 962
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	2 cut(s)	363, 927
MluCI	AATT	7 cut(s)	70, 165, 172, 442, 691, 729, 978
MlyI	GAGTC	2 cut(s)	812, 813
MmeI	TCCRAC	5 cut(s)	116, 270, 448, 690, 778
Mph1103I	ATGCAT	1 cut(s)	899
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	998
MspI	CCGG	5 cut(s)	111, 135, 177, 344, 1019
MspR9I	CCNGG	5 cut(s)	157, 178, 414, 773, 841
Mva1269I	GAATGC	2 cut(s)	423, 661
MvaI	CCWGG	4 cut(s)	157, 414, 773, 841
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	861, 952
NlaIII	CATG	4 cut(s)	202, 289, 542, 853
NlaIV	GGNNCC	4 cut(s)	133, 142, 181, 613
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	2 cut(s)	423, 661
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	293, 349
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	812, 812
PmaCI	CACGTG	1 cut(s)	873
PmlI	CACGTG	1 cut(s)	873
PpsI	GAGTC	2 cut(s)	812, 812
Ppu21I	YACGTR	1 cut(s)	873
PpuMI	RGGWCCY	1 cut(s)	180
PscI	ACATGT	1 cut(s)	285
PshBI	ATTAAT	1 cut(s)	998
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	4 cut(s)	155, 412, 771, 839
PspCI	CACGTG	1 cut(s)	873
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	4 cut(s)	155, 412, 771, 839
PspN4I	GGNNCC	4 cut(s)	133, 142, 181, 613
PspPI	GGNCC	2 cut(s)	140, 180
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	952
RsaI	GTAC	3 cut(s)	60, 203, 770
RsaNI	GTAC	3 cut(s)	59, 202, 769
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	998
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	861, 952
Sau96I	GGNCC	2 cut(s)	140, 180
SchI	GAGTC	2 cut(s)	812, 813
ScrFI	CCNGG	5 cut(s)	157, 178, 414, 773, 841
SduI	GDGCHC	2 cut(s)	363, 927
SexAI	ACCWGGT	1 cut(s)	771
SfaNI	GCATC	1 cut(s)	884
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	7 cut(s)	70, 165, 172, 442, 691, 729, 978
SsiI	CCGC	3 cut(s)	464, 642, 831
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	5 cut(s)	155, 176, 412, 771, 839
TaiI	ACGT	4 cut(s)	244, 770, 858, 875
TaqI	TCGA	4 cut(s)	123, 651, 816, 867
TasI	AATT	7 cut(s)	70, 165, 172, 442, 691, 729, 978
TfiI	GAWTC	2 cut(s)	293, 349
Tru1I	TTAA	1 cut(s)	998
Tru9I	TTAA	1 cut(s)	998
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	17, 39, 933, 1055
TspGWI	ACGGA	1 cut(s)	690
VneI	GTGCAC	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	998
XapI	RAATTY	2 cut(s)	172, 442
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	856
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.