Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

41564912 .. 41570044

Gene Structure 5133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGTCGTCGTCGTCTTCATCCGAGGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGGAGGCCCCGACCCAGGAACCTGGCAACAAATCGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATACTGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGGCTGGTATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTTTGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGCTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATGCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAGCTATGAAGATCTTTCACCTGAGGGACGCCCAAAAGTGAAATATCCTCTAAACGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCAAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGGGCTGCTTGCTTCTGCTCATATATTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGTCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

42.2

Weight (kDa)

8.64

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	27
AccI	GTMKAC	2 cut(s)	581, 1044
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	726, 739
AcsI	RAATTY	2 cut(s)	142, 431
AcuI	CTGAAG	1 cut(s)	914
AcyI	GRCGYC	1 cut(s)	784
AfaI	GTAC	4 cut(s)	29, 173, 675, 883
AfiI	CCNNNNNNNGG	4 cut(s)	119, 662, 809, 999
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	7 cut(s)	76, 371, 428, 566, 589, 610, 1097
AjnI	CCWGG	4 cut(s)	118, 125, 939, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	8 cut(s)	72, 194, 331, 572, 759, 989, 1057, 1088
AluI	AGCT	8 cut(s)	72, 194, 331, 572, 759, 989, 1057, 1088
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	143, 1006
AlwI	GGATC	2 cut(s)	726, 739
AoxI	GGCC	2 cut(s)	109, 1123
ApeKI	GCWGC	6 cut(s)	182, 945, 1054, 1088, 1109, 1112
ApoI	RAATTY	2 cut(s)	142, 431
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	765, 1087
AxyI	CCTNAGG	2 cut(s)	657, 777
BamHI	GGATCC	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	2 cut(s)	8, 673
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	169, 932, 1066, 1075, 1096, 1124
BccI	CCATC	3 cut(s)	90, 464, 524
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	4 cut(s)	120, 127, 941, 1073
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	143, 1006
BfaI	CTAG	2 cut(s)	1040, 1085
BfmI	CTRYAG	1 cut(s)	1110
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	6 cut(s)	183, 946, 1055, 1089, 1110, 1113
BlsI	GCNGC	6 cut(s)	184, 947, 1056, 1090, 1111, 1114
Bme1390I	CCNGG	5 cut(s)	105, 120, 127, 941, 1073
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	7 cut(s)	29, 102, 112, 124, 601, 733, 878
BmrFI	CCNGG	5 cut(s)	105, 120, 127, 941, 1073
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	731
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	8, 673
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	2 cut(s)	449, 573
BpuMI	CCSGG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	4 cut(s)	23, 118, 939, 940
BsaWI	WCCGGW	2 cut(s)	79, 313
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 662, 809, 999
Bse1I	ACTGG	2 cut(s)	388, 1126
Bse21I	CCTNAGG	2 cut(s)	657, 777
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	4 cut(s)	120, 127, 941, 1073
BseDI	CCNNGG	4 cut(s)	23, 118, 939, 940
BseGI	GGATG	3 cut(s)	19, 238, 475
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	119, 662, 809, 999
BseMII	CTCAG	6 cut(s)	58, 219, 564, 648, 671, 768
BseNI	ACTGG	2 cut(s)	388, 1126
BseRI	GAGGAG	2 cut(s)	42, 191
BseXI	GCAGC	6 cut(s)	169, 932, 1066, 1075, 1096, 1124
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	2 cut(s)	111, 1125
BshNI	GGYRCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	80, 104, 314
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	4 cut(s)	119, 662, 809, 999
BsmAI	GTCTC	2 cut(s)	143, 1006
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	2 cut(s)	412, 649
BsnI	GGCC	2 cut(s)	111, 1125
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	731, 766
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	2 cut(s)	111, 1125
BspCNI	CTCAG	6 cut(s)	57, 220, 565, 649, 672, 769
BspLI	GGNNCC	7 cut(s)	29, 102, 112, 124, 601, 733, 878
BspMAI	CTGCAG	1 cut(s)	1114
BspPI	GGATC	2 cut(s)	726, 739
BspT107I	GGYRCC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	388, 1126
BssECI	CCNNGG	4 cut(s)	23, 118, 939, 940
BssMI	GATC	2 cut(s)	731, 766
BssNAI	GTATAC	1 cut(s)	582
BssNI	GRCGYC	1 cut(s)	784
Bst1107I	GTATAC	1 cut(s)	582
Bst2UI	CCWGG	4 cut(s)	120, 127, 941, 1073
BstACI	GRCGYC	1 cut(s)	784
BstC8I	GCNNGC	3 cut(s)	950, 1059, 1123
BstDEI	CTNAG	8 cut(s)	44, 228, 449, 573, 657, 680, 777, 822
BstENI	CCTNNNNNAGG	1 cut(s)	997
BstF5I	GGATG	3 cut(s)	19, 238, 475
BstKTI	GATC	2 cut(s)	734, 769
BstMAI	GTCTC	2 cut(s)	143, 1006
BstMBI	GATC	2 cut(s)	731, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 710, 719, 1118
BstNI	CCWGG	4 cut(s)	120, 127, 941, 1073
BstNSI	RCATGY	2 cut(s)	259, 704
BstSCI	CCNGG	5 cut(s)	103, 118, 125, 939, 1071
BstSFI	CTRYAG	1 cut(s)	1110
BstV1I	GCAGC	6 cut(s)	169, 932, 1066, 1075, 1096, 1124
BstV2I	GAAGAC	2 cut(s)	8, 673
BstX2I	RGATCY	2 cut(s)	731, 766
BstXI	CCANNNNNNTGG	2 cut(s)	126, 870
BstYI	RGATCY	2 cut(s)	731, 766
BstZ17I	GTATAC	1 cut(s)	582
Bsu36I	CCTNAGG	2 cut(s)	657, 777
BsuRI	GGCC	2 cut(s)	111, 1125
BtsCI	GGATG	3 cut(s)	19, 238, 475
Cac8I	GCNNGC	3 cut(s)	950, 1059, 1123
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	792
CsiI	ACCWGGT	1 cut(s)	1071
Csp6I	GTAC	4 cut(s)	28, 172, 674, 882
CviAII	CATG	5 cut(s)	169, 256, 527, 701, 864
CviQI	GTAC	4 cut(s)	28, 172, 674, 882
DdeI	CTNAG	8 cut(s)	44, 228, 449, 573, 657, 680, 777, 822
DpnI	GATC	2 cut(s)	733, 768
DpnII	GATC	2 cut(s)	731, 766
DraI	TTTAAA	1 cut(s)	840
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	914
Eco81I	CCTNAGG	2 cut(s)	657, 777
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	997
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	4 cut(s)	118, 125, 939, 1071
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	5 cut(s)	172, 259, 530, 704, 867
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 432, 464
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	5 cut(s)	168, 255, 526, 700, 863
FblI	GTMKAC	2 cut(s)	581, 1044
Fnu4HI	GCNGC	6 cut(s)	183, 946, 1055, 1089, 1110, 1113
FokI	GGATG	3 cut(s)	6, 245, 482
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	6 cut(s)	183, 946, 1055, 1089, 1110, 1113
FspBI	CTAG	2 cut(s)	1040, 1085
GluI	GCNGC	6 cut(s)	183, 946, 1055, 1089, 1110, 1113
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	111, 1125
HapII	CCGG	3 cut(s)	80, 104, 314
HgaI	GACGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	784
Hin1II	CATG	5 cut(s)	172, 259, 530, 704, 867
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	263, 319
HpaII	CCGG	3 cut(s)	80, 104, 314
HphI	GGTGA	2 cut(s)	765, 1087
Hpy166II	GTNNAC	5 cut(s)	85, 582, 619, 1045, 1078
Hpy188I	TCNGA	8 cut(s)	24, 148, 207, 324, 406, 681, 894, 1011
Hpy188III	TCNNGA	6 cut(s)	93, 139, 428, 437, 563, 640
Hpy8I	GTNNAC	5 cut(s)	85, 582, 619, 1045, 1078
Hpy99I	CGWCG	2 cut(s)	12, 15
HpyAV	CCTTC	3 cut(s)	300, 401, 745
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	6 cut(s)	286, 509, 704, 976, 1061, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 710, 719, 1118
HpyF3I	CTNAG	8 cut(s)	44, 228, 449, 573, 657, 680, 777, 822
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	784
Hsp92II	CATG	5 cut(s)	172, 259, 530, 704, 867
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	731, 766
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	6 cut(s)	169, 932, 1066, 1075, 1096, 1124
LweI	GCATC	1 cut(s)	731
MabI	ACCWGGT	1 cut(s)	1071
MaeI	CTAG	2 cut(s)	1040, 1085
MaeII	ACGT	1 cut(s)	211
MalI	GATC	2 cut(s)	733, 768
MboI	GATC	2 cut(s)	731, 766
MboII	GAAGA	5 cut(s)	8, 368, 678, 696, 776
MflI	RGATCY	2 cut(s)	731, 766
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	4 cut(s)	39, 142, 431, 705
MmeI	TCCRAC	3 cut(s)	85, 240, 437
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	708, 839, 995
MspI	CCGG	3 cut(s)	80, 104, 314
MspR9I	CCNGG	5 cut(s)	105, 120, 127, 941, 1073
Mva1269I	GAATGC	2 cut(s)	412, 649
MvaI	CCWGG	4 cut(s)	120, 127, 941, 1073
MwoI	GCNNNNNNNGC	4 cut(s)	191, 710, 719, 1118
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	731, 766
NlaIII	CATG	5 cut(s)	172, 259, 530, 704, 867
NlaIV	GGNNCC	7 cut(s)	29, 102, 112, 124, 601, 733, 878
NspI	RCATGY	2 cut(s)	259, 704
PasI	CCCWGGG	1 cut(s)	940
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	2 cut(s)	412, 649
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	263, 319
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	184, 947, 1056, 1090, 1111, 1114
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	4 cut(s)	118, 125, 939, 1071
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	4 cut(s)	118, 125, 939, 1071
PspN4I	GGNNCC	7 cut(s)	29, 102, 112, 124, 601, 733, 878
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	1114
PsuI	RGATCY	2 cut(s)	731, 766
RsaI	GTAC	4 cut(s)	29, 173, 675, 883
RsaNI	GTAC	4 cut(s)	28, 172, 674, 882
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	708, 839, 995
SatI	GCNGC	6 cut(s)	183, 946, 1055, 1089, 1110, 1113
Sau3AI	GATC	2 cut(s)	731, 766
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	5 cut(s)	105, 120, 127, 941, 1073
SduI	GDGCHC	1 cut(s)	333
SexAI	ACCWGGT	1 cut(s)	1071
SfaNI	GCATC	1 cut(s)	731
SfcI	CTRYAG	1 cut(s)	1110
Sse9I	AATT	4 cut(s)	39, 142, 431, 705
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	2 cut(s)	1040, 1085
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	5 cut(s)	103, 118, 125, 939, 1071
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	92, 138, 639
TasI	AATT	4 cut(s)	39, 142, 431, 705
TfiI	GAWTC	2 cut(s)	263, 319
Tru1I	TTAA	3 cut(s)	708, 839, 995
Tru9I	TTAA	3 cut(s)	708, 839, 995
TseI	GCWGC	6 cut(s)	182, 945, 1054, 1088, 1109, 1112
TspDTI	ATGAA	4 cut(s)	8, 777, 1043, 1056
TspGWI	ACGGA	3 cut(s)	678, 825, 869
XagI	CCTNNNNNAGG	1 cut(s)	997
XapI	RAATTY	2 cut(s)	142, 431
XceI	RCATGY	2 cut(s)	259, 704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XmiI	GTMKAC	2 cut(s)	581, 1044
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	1040, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.