Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

41952413 .. 41956587

Gene Structure 4175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTTTGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGTTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTATGAAGATCCTTCACCTGAGGGATGCCCAAAAGTGAAATATCCTCTAAATGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGGGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.78

Weight (kDa)

9.2

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	308, 771
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	3 cut(s)	453, 466, 488
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	402, 610
AfiI	CCNNNNNNNGG	3 cut(s)	389, 536, 726
AgsI	TTSAA	7 cut(s)	98, 155, 293, 316, 337, 432, 824
AjnI	CCWGG	2 cut(s)	666, 798
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	4 cut(s)	58, 716, 784, 815
AluI	AGCT	4 cut(s)	58, 716, 784, 815
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	3 cut(s)	453, 466, 488
AoxI	GGCC	1 cut(s)	850
ApeKI	GCWGC	5 cut(s)	672, 781, 815, 836, 839
ApoI	RAATTY	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	492, 814
AxyI	CCTNAGG	2 cut(s)	384, 504
BamHI	GGATCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	5 cut(s)	659, 793, 802, 823, 851
BccI	CCATC	2 cut(s)	191, 251
BciT130I	CCWGG	2 cut(s)	668, 800
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	2 cut(s)	767, 812
BfmI	CTRYAG	1 cut(s)	837
BisI	GCNGC	5 cut(s)	673, 782, 816, 837, 840
BlsI	GCNGC	5 cut(s)	674, 783, 817, 838, 841
Bme1390I	CCNGG	2 cut(s)	668, 800
BmiI	GGNNCC	3 cut(s)	328, 460, 605
BmrFI	CCNGG	2 cut(s)	668, 800
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	458, 500
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	666, 667
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 536, 726
Bse1I	ACTGG	2 cut(s)	115, 853
Bse21I	CCTNAGG	2 cut(s)	384, 504
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	668, 800
BseDI	CCNNGG	2 cut(s)	666, 667
BseGI	GGATG	2 cut(s)	202, 515
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	389, 536, 726
BseMII	CTCAG	3 cut(s)	375, 398, 495
BseNI	ACTGG	2 cut(s)	115, 853
BseXI	GCAGC	5 cut(s)	659, 793, 802, 823, 851
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	852
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	3 cut(s)	389, 536, 726
BsmAI	GTCTC	1 cut(s)	733
BsmI	GAATGC	2 cut(s)	139, 376
BsnI	GGCC	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	458, 493
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	852
BspCNI	CTCAG	3 cut(s)	376, 399, 496
BspLI	GGNNCC	3 cut(s)	328, 460, 605
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	3 cut(s)	453, 466, 488
BsrI	ACTGG	2 cut(s)	115, 853
BssECI	CCNNGG	2 cut(s)	666, 667
BssMI	GATC	2 cut(s)	458, 493
BssNAI	GTATAC	1 cut(s)	309
Bst1107I	GTATAC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	668, 800
BstC8I	GCNNGC	2 cut(s)	786, 850
BstDEI	CTNAG	5 cut(s)	176, 384, 407, 504, 549
BstENI	CCTNNNNNAGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	202, 515
BstKTI	GATC	2 cut(s)	461, 496
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	2 cut(s)	458, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 845
BstNI	CCWGG	2 cut(s)	668, 800
BstSCI	CCNGG	2 cut(s)	666, 798
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	5 cut(s)	659, 793, 802, 823, 851
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	458, 493
BstXI	CCANNNNNNTGG	1 cut(s)	597
BstYI	RGATCY	2 cut(s)	458, 493
BstZ17I	GTATAC	1 cut(s)	309
Bsu36I	CCTNAGG	2 cut(s)	384, 504
BsuRI	GGCC	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	202, 515
Cac8I	GCNNGC	2 cut(s)	786, 850
CsiI	ACCWGGT	1 cut(s)	798
Csp6I	GTAC	2 cut(s)	401, 609
CviAII	CATG	2 cut(s)	254, 591
CviJI	RGCY	8 cut(s)	58, 440, 672, 716, 746, 784, 815, 852
CviKI_1	RGCY	8 cut(s)	58, 440, 672, 716, 746, 784, 815, 852
CviQI	GTAC	2 cut(s)	401, 609
DdeI	CTNAG	5 cut(s)	176, 384, 407, 504, 549
DpnI	GATC	2 cut(s)	460, 495
DpnII	GATC	2 cut(s)	458, 493
DraI	TTTAAA	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	641
Eco81I	CCTNAGG	2 cut(s)	384, 504
EcoICRI	GAGCTC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	666, 798
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	2 cut(s)	257, 594
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 159, 191
FatI	CATG	2 cut(s)	253, 590
FblI	GTMKAC	2 cut(s)	308, 771
Fnu4HI	GCNGC	5 cut(s)	673, 782, 816, 837, 840
FokI	GGATG	2 cut(s)	209, 522
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	5 cut(s)	673, 782, 816, 837, 840
FspBI	CTAG	2 cut(s)	767, 812
GluI	GCNGC	5 cut(s)	673, 782, 816, 837, 840
GsaI	CCCAGC	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	852
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	2 cut(s)	257, 594
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	46, 679
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	492, 814
Hpy166II	GTNNAC	4 cut(s)	309, 346, 772, 805
Hpy188I	TCNGA	5 cut(s)	51, 133, 408, 621, 738
Hpy188III	TCNNGA	4 cut(s)	155, 164, 290, 367
Hpy8I	GTNNAC	4 cut(s)	309, 346, 772, 805
HpyAV	CCTTC	4 cut(s)	27, 128, 472, 507
HpyCH4V	TGCA	5 cut(s)	13, 236, 703, 788, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 845
HpyF3I	CTNAG	5 cut(s)	176, 384, 407, 504, 549
Hsp92II	CATG	2 cut(s)	257, 594
Kzo9I	GATC	2 cut(s)	458, 493
Lsp1109I	GCAGC	5 cut(s)	659, 793, 802, 823, 851
LweI	GCATC	2 cut(s)	458, 500
MabI	ACCWGGT	1 cut(s)	798
MaeI	CTAG	2 cut(s)	767, 812
MalI	GATC	2 cut(s)	460, 495
MboI	GATC	2 cut(s)	458, 493
MboII	GAAGA	4 cut(s)	95, 405, 423, 503
MflI	RGATCY	2 cut(s)	458, 493
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	158, 432
MmeI	TCCRAC	1 cut(s)	164
MseI	TTAA	3 cut(s)	435, 566, 722
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	668, 800
Mva1269I	GAATGC	2 cut(s)	139, 376
MvaI	CCWGG	2 cut(s)	668, 800
MwoI	GCNNNNNNNGC	2 cut(s)	446, 845
NdeII	GATC	2 cut(s)	458, 493
NlaIII	CATG	2 cut(s)	257, 594
NlaIV	GGNNCC	3 cut(s)	328, 460, 605
PasI	CCCWGGG	1 cut(s)	667
PctI	GAATGC	2 cut(s)	139, 376
PfeI	GAWTC	2 cut(s)	46, 679
PkrI	GCNGC	5 cut(s)	674, 783, 817, 838, 841
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	666, 798
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	666, 798
PspN4I	GGNNCC	3 cut(s)	328, 460, 605
PstI	CTGCAG	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	458, 493
RsaI	GTAC	2 cut(s)	402, 610
RsaNI	GTAC	2 cut(s)	401, 609
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	435, 566, 722
SatI	GCNGC	5 cut(s)	673, 782, 816, 837, 840
Sau3AI	GATC	2 cut(s)	458, 493
ScrFI	CCNGG	2 cut(s)	668, 800
SduI	GDGCHC	1 cut(s)	60
SexAI	ACCWGGT	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	458, 500
SfcI	CTRYAG	1 cut(s)	837
Sse9I	AATT	2 cut(s)	158, 432
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	767, 812
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	666, 798
TaqI	TCGA	2 cut(s)	366, 575
TasI	AATT	2 cut(s)	158, 432
TfiI	GAWTC	2 cut(s)	46, 679
Tru1I	TTAA	3 cut(s)	435, 566, 722
Tru9I	TTAA	3 cut(s)	435, 566, 722
TseI	GCWGC	5 cut(s)	672, 781, 815, 836, 839
TspDTI	ATGAA	3 cut(s)	504, 770, 783
TspGWI	ACGGA	2 cut(s)	405, 596
XagI	CCTNNNNNAGG	1 cut(s)	724
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XmiI	GTMKAC	2 cut(s)	308, 771
XspI	CTAG	2 cut(s)	767, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.