Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

13048353 .. 13048920

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGAGGGAGGCAGGAGAGAGACAAAGCAATGGGTCGTCATCATCTTCATCCGAAGTACCTCTTATCAATTCTCGGTCCTCCTCCCATCCAACCGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAAGAACTCGGCAACAAATTGAGAATTCGGGACCTACCTTGTCTGCTCCATGGCATTCTCTTGGTATTCAAGAATTTCGGAAGTGTTCCTTAGCGGTTGGAGTTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGCATTGATAAGTATCTTGTAGTAGCCGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATAATGTTGACCTTGCTAACTCTTGGGTCGAGAATGCTAAAATACCCGAGGACGGAAGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.81

Weight (kDa)

5.79

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	172, 221
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	107, 218, 379, 400
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	1 cut(s)	139
ApoI	RAATTY	2 cut(s)	172, 221
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	78, 140, 179
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	78, 179
BccI	CCATC	4 cut(s)	96, 121, 254, 314
BcoDI	GTCTC	1 cut(s)	16
Bme18I	GGWCC	2 cut(s)	78, 179
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	78, 140, 179
BmiI	GGNNCC	4 cut(s)	133, 142, 180, 391
Bpu10I	CCTNAGC	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	197, 363, 447
BsaWI	WCCGGW	2 cut(s)	110, 134
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	197, 363, 447
BseGI	GGATG	3 cut(s)	50, 88, 265
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	111, 135
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	2 cut(s)	202, 439
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	133, 142, 180, 391
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	197, 363, 447
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	238
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	3 cut(s)	50, 88, 265
BstMAI	GTCTC	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	50, 88, 265
Cfr13I	GGNCC	3 cut(s)	78, 140, 179
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	2 cut(s)	198, 317
CviJI	RGCY	3 cut(s)	103, 141, 362
CviKI_1	RGCY	3 cut(s)	103, 141, 362
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	78, 179
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	140, 179
EcoRI	GAATTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	201, 320
FaiI	YATR	5 cut(s)	199, 273, 306, 318, 372
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 221, 253
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	197, 316
FblI	GTMKAC	1 cut(s)	371
FokI	GGATG	3 cut(s)	37, 75, 272
GsaI	CCCAGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	111, 135
Hin1II	CATG	2 cut(s)	201, 320
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HpaII	CCGG	2 cut(s)	111, 135
Hpy166II	GTNNAC	3 cut(s)	116, 372, 409
Hpy188I	TCNGA	2 cut(s)	55, 228
Hpy188III	TCNNGA	5 cut(s)	124, 135, 177, 218, 430
Hpy8I	GTNNAC	3 cut(s)	116, 372, 409
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	238
Hsp92II	CATG	2 cut(s)	201, 320
Kpn2I	TCCGGA	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	124, 148, 371
MboII	GAAGA	2 cut(s)	16, 39
MluCI	AATT	4 cut(s)	70, 165, 172, 221
MmeI	TCCRAC	2 cut(s)	116, 226
MnlI	CCTC	7 cut(s)	4, 72, 91, 94, 131, 358, 442
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MspI	CCGG	2 cut(s)	111, 135
Mva1269I	GAATGC	2 cut(s)	202, 439
NcoI	CCATGG	1 cut(s)	197
NlaIII	CATG	2 cut(s)	201, 320
NlaIV	GGNNCC	4 cut(s)	133, 142, 180, 391
NmeAIII	GCCGAG	2 cut(s)	136, 388
PctI	GAATGC	2 cut(s)	202, 439
PdmI	GAANNNNTTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	4 cut(s)	133, 142, 180, 391
PspPI	GGNCC	3 cut(s)	78, 140, 179
PspPPI	RGGWCCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
Sau96I	GGNCC	3 cut(s)	78, 140, 179
SetI	ASST	6 cut(s)	64, 105, 184, 188, 369, 414
SinI	GGWCC	2 cut(s)	78, 179
Sse9I	AATT	4 cut(s)	70, 165, 172, 221
SsiI	CCGC	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	123, 429
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	70, 165, 172, 221
TspDTI	ATGAA	2 cut(s)	17, 39
VpaK11BI	GGWCC	2 cut(s)	78, 179
XapI	RAATTY	2 cut(s)	172, 221
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.