Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

23095579 .. 23100574

Gene Structure 4996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G276600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGACTGAGGCGAGTGAGAGTCAGAGCAATTGCTCGTCTTCAACCGAGGTAGAATCCGGTTCACAAGGCAAGTCAGAGAAAGACTGTGAAATGGAGATGAGTTCCAAAAGCTCCGACCCTGCAATCTGGGAAGAAATTGAGCTTTCCGAGAGCTACCTTGTTTGCTCAATGTATGAGGAGGCAGCGTCATCAGCCTCCTCTATTTTGAAGCGTCTTTCTAAACATAGTGAAGACCTTGAAGCCACAGACCATTTTGAATTGTATGACATGTTGGAATCGGCTGGTATGGTGCTTGTCCAATCCTTAAGAGAACTTGGAAGGACATCAGAAATTCTGCACGAGCTCAAACTATTATTTGCTTTTGTTCCTACTATTCCTGTTCAAGTTCTTCTCACTGGGATATGTTTTTATATATCAGAAGGGCACTCTCTTGGTGTTCAAGAATTTCTGGAAGAGTTCCTTAGCAGGTGGACTTTTGTCGATGAACAATATGTTCTTGTTGGTACAGAAGAAAATGCAGATTATACGGAAAAATGTGATGGGCCTTTTCTCTTGGGAGTTGATACGTATCTAGAAGTTGTTGAGGTCTATGTTCTGAAACTTCTGGGAACCATTTTGAATGATATTGACCTTGCATCTTCTTGGGTCGAGAATGCTAAATTACCTGAGGACAGAAGACAGGTACTTCTGAGAAGATTACACTCACTGCATTCTGTTAAGGCCACTAATTCCTCACAAGGTACCTTCTCATCTTTGCTGGTGGACGACAATGAAGGTCATTCGTCATGTTTGCAGCAGATAACTGTGCCAGACGGATATCCAAAAAACAAATACCCTCCAAGGGGAGACACTGCTAAGAACCAAGCAGTTTTTAATTTATCTAAAAGATTGGAACCATGTTTCTGGTGGTTCCGTACCATCACTCTGAAATTTGGAAGTGCTCAGGTGGTAATATCTAATGGAAAGATTGTCCTGGGCTTCTTGATTCTGCTCATATATTATGTTTTCCGGAGGAAACAAGCTAGCATAAAGAGAATTGTTCGGAGACAGACTTTATCAATGAAGAATGCTCTGGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAATCCTTTAGCTGCTGTTCAACCTCTCGCGGCCGCAACAAGGTCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

43.62

Weight (kDa)

5.09

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	459
Acc65I	GGTACC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	1080
AccII	CGCG	1 cut(s)	1142
AccIII	TCCGGA	1 cut(s)	1011
AciI	CCGC	2 cut(s)	1142, 1146
AcoI	YGGCCR	1 cut(s)	1143
AcsI	RAATTY	3 cut(s)	333, 446, 932
AfaI	GTAC	4 cut(s)	508, 687, 745, 919
AfiI	CCNNNNNNNGG	3 cut(s)	844, 845, 1152
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	8 cut(s)	45, 211, 242, 260, 386, 443, 622, 1133
AjnI	CCWGG	2 cut(s)	975, 1107
AluBI	AGCT	7 cut(s)	114, 145, 156, 346, 1025, 1093, 1124
AluI	AGCT	7 cut(s)	114, 145, 156, 346, 1025, 1093, 1124
Alw21I	GWGCWC	2 cut(s)	348, 946
Alw26I	GTCTC	2 cut(s)	843, 1042
Aor13HI	TCCGGA	1 cut(s)	1011
AoxI	GGCC	4 cut(s)	545, 723, 1143, 1159
ApeKI	GCWGC	4 cut(s)	185, 796, 1090, 1124
ApoI	RAATTY	3 cut(s)	333, 446, 932
Asp718I	GGTACC	1 cut(s)	743
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	1123
AsuNHI	GCTAGC	1 cut(s)	1025
AxyI	CCTNAGG	1 cut(s)	669
BaeGI	GKGCMC	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	348
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	4 cut(s)	11, 33, 240, 685
Bbv12I	GWGCWC	2 cut(s)	348, 946
BbvI	GCAGC	4 cut(s)	197, 808, 1102, 1111
BccI	CCATC	2 cut(s)	536, 929
BciT130I	CCWGG	2 cut(s)	977, 1109
BcoDI	GTCTC	2 cut(s)	843, 1042
BfaI	CTAG	2 cut(s)	575, 1026
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	6 cut(s)	186, 797, 1091, 1125, 1143, 1146
BlsI	GCNGC	6 cut(s)	187, 798, 1092, 1126, 1144, 1147
Bme1390I	CCNGG	2 cut(s)	977, 1109
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	4 cut(s)	613, 745, 897, 914
BmrFI	CCNGG	2 cut(s)	977, 1109
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	647
BmtI	GCTAGC	1 cut(s)	1029
BmuI	ACTGGG	1 cut(s)	408
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	4 cut(s)	11, 33, 240, 685
Bpu10I	CCTNAGC	2 cut(s)	464, 945
BsaAI	YACGTR	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	48, 842, 976
BsaWI	WCCGGW	2 cut(s)	59, 1011
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	844, 845, 1152
Bse1I	ACTGG	2 cut(s)	403, 1162
Bse21I	CCTNAGG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	1011
BseBI	CCWGG	2 cut(s)	977, 1109
BseDI	CCNNGG	3 cut(s)	48, 842, 976
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	3 cut(s)	844, 845, 1152
BseMII	CTCAG	3 cut(s)	660, 683, 959
BseNI	ACTGG	2 cut(s)	403, 1162
BseRI	GAGGAG	2 cut(s)	190, 194
BseSI	GKGCMC	1 cut(s)	429
BseX3I	CGGCCG	1 cut(s)	1143
BseXI	GCAGC	4 cut(s)	197, 808, 1102, 1111
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	1142
Bsh1285I	CGRYCG	1 cut(s)	1146
BshFI	GGCC	4 cut(s)	547, 725, 1145, 1161
BshNI	GGYRCC	1 cut(s)	743
BsiEI	CGRYCG	1 cut(s)	1146
BsiHKAI	GWGCWC	2 cut(s)	348, 946
BsiSI	CCGG	2 cut(s)	60, 1012
BslI	CCNNNNNNNGG	3 cut(s)	844, 845, 1152
BsmAI	GTCTC	2 cut(s)	843, 1042
BsmI	GAATGC	3 cut(s)	661, 712, 1075
BsnI	GGCC	4 cut(s)	547, 725, 1145, 1161
Bsp1286I	GDGCHC	3 cut(s)	348, 429, 946
Bsp13I	TCCGGA	1 cut(s)	1011
BspACI	CCGC	2 cut(s)	1142, 1146
BspANI	GGCC	4 cut(s)	547, 725, 1145, 1161
BspCNI	CTCAG	3 cut(s)	661, 684, 958
BspEI	TCCGGA	1 cut(s)	1011
BspFNI	CGCG	1 cut(s)	1142
BspLI	GGNNCC	4 cut(s)	613, 745, 897, 914
BspMI	ACCTGC	1 cut(s)	459
BspOI	GCTAGC	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	743
BspTI	CTTAAG	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	403, 1162
BssECI	CCNNGG	3 cut(s)	48, 842, 976
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	977, 1109
Bst4CI	ACNGT	2 cut(s)	89, 808
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	1027, 1095
BstDEI	CTNAG	6 cut(s)	9, 464, 669, 692, 858, 945
BstFNI	CGCG	1 cut(s)	1142
BstMAI	GTCTC	2 cut(s)	843, 1042
BstMCI	CGRYCG	1 cut(s)	1146
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	977, 1109
BstNSI	RCATGY	1 cut(s)	274
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSCI	CCNGG	2 cut(s)	975, 1107
BstSLI	GKGCMC	1 cut(s)	429
BstSNI	TACGTA	1 cut(s)	570
BstUI	CGCG	1 cut(s)	1142
BstV1I	GCAGC	4 cut(s)	197, 808, 1102, 1111
BstV2I	GAAGAC	4 cut(s)	11, 33, 240, 685
BstXI	CCANNNNNNTGG	1 cut(s)	906
BstZI	CGGCCG	1 cut(s)	1143
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	547, 725, 1145, 1161
BtsI	GCAGTG	2 cut(s)	707, 852
BtsIMutI	CAGTG	3 cut(s)	396, 707, 852
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	1027, 1095
CciNI	GCGGCCGC	1 cut(s)	1143
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	2 cut(s)	177, 203
CsiI	ACCWGGT	1 cut(s)	1107
Csp6I	GTAC	4 cut(s)	507, 686, 744, 918
CviAII	CATG	3 cut(s)	271, 789, 900
CviQI	GTAC	4 cut(s)	507, 686, 744, 918
DdeI	CTNAG	6 cut(s)	9, 464, 669, 692, 858, 945
EaeI	YGGCCR	1 cut(s)	1143
EagI	CGGCCG	1 cut(s)	1143
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	346
EclXI	CGGCCG	1 cut(s)	1143
Eco105I	TACGTA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	842
Eco24I	GRGCYC	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	821
Eco52I	CGGCCG	1 cut(s)	1143
Eco53kI	GAGCTC	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	975, 1107
EcoRV	GATATC	1 cut(s)	821
EcoT14I	CCWWGG	1 cut(s)	842
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	3 cut(s)	274, 792, 903
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	3 cut(s)	270, 788, 899
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	6 cut(s)	186, 797, 1091, 1125, 1143, 1146
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	6 cut(s)	186, 797, 1091, 1125, 1143, 1146
FspBI	CTAG	2 cut(s)	575, 1026
GluI	GCNGC	6 cut(s)	186, 797, 1091, 1125, 1143, 1146
HaeIII	GGCC	4 cut(s)	547, 725, 1145, 1161
HapII	CCGG	2 cut(s)	60, 1012
HgaI	GACGC	2 cut(s)	177, 203
Hin1II	CATG	3 cut(s)	274, 792, 903
HinfI	GANTC	5 cut(s)	22, 56, 278, 988, 1114
HpaII	CCGG	2 cut(s)	60, 1012
HphI	GGTGA	1 cut(s)	1123
Hpy166II	GTNNAC	4 cut(s)	65, 474, 766, 1081
Hpy188III	TCNNGA	6 cut(s)	443, 452, 575, 652, 985, 1012
Hpy8I	GTNNAC	4 cut(s)	65, 474, 766, 1081
HpyAV	CCTTC	4 cut(s)	315, 416, 757, 770
HpyCH4III	ACNGT	2 cut(s)	89, 808
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	7 cut(s)	125, 340, 521, 638, 712, 796, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	6 cut(s)	9, 464, 669, 692, 858, 945
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	3 cut(s)	274, 792, 903
Kpn2I	TCCGGA	1 cut(s)	1011
KpnI	GGTACC	1 cut(s)	747
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	4 cut(s)	197, 808, 1102, 1111
LweI	GCATC	1 cut(s)	647
MabI	ACCWGGT	1 cut(s)	1107
MaeI	CTAG	2 cut(s)	575, 1026
MaeII	ACGT	1 cut(s)	569
MfeI	CAATTG	1 cut(s)	31
MhlI	GDGCHC	3 cut(s)	348, 429, 946
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	141, 255
MroI	TCCGGA	1 cut(s)	1011
MseI	TTAA	3 cut(s)	308, 720, 876
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	2 cut(s)	60, 1012
MspR9I	CCNGG	2 cut(s)	977, 1109
MunI	CAATTG	1 cut(s)	31
Mva1269I	GAATGC	3 cut(s)	661, 712, 1075
MvaI	CCWGG	2 cut(s)	977, 1109
MvnI	CGCG	1 cut(s)	1142
MwoI	GCNNNNNNNGC	1 cut(s)	194
NheI	GCTAGC	1 cut(s)	1025
NlaIII	CATG	3 cut(s)	274, 792, 903
NlaIV	GGNNCC	4 cut(s)	613, 745, 897, 914
NotI	GCGGCCGC	1 cut(s)	1143
NspI	RCATGY	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	459
PciI	ACATGT	1 cut(s)	270
PctI	GAATGC	3 cut(s)	661, 712, 1075
PfeI	GAWTC	4 cut(s)	56, 278, 988, 1114
PkrI	GCNGC	6 cut(s)	187, 798, 1092, 1126, 1144, 1147
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	570
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	975, 1107
PspGI	CCWGG	2 cut(s)	975, 1107
PspN4I	GGNNCC	4 cut(s)	613, 745, 897, 914
PspPI	GGNCC	1 cut(s)	545
RsaI	GTAC	4 cut(s)	508, 687, 745, 919
RsaNI	GTAC	4 cut(s)	507, 686, 744, 918
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	308, 720, 876
SatI	GCNGC	6 cut(s)	186, 797, 1091, 1125, 1143, 1146
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	977, 1109
SduI	GDGCHC	3 cut(s)	348, 429, 946
SexAI	ACCWGGT	1 cut(s)	1107
SfaNI	GCATC	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SnaBI	TACGTA	1 cut(s)	570
SsiI	CCGC	2 cut(s)	1142, 1146
SspMI	CTAG	2 cut(s)	575, 1026
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	975, 1107
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	2 cut(s)	89, 808
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	2 cut(s)	483, 651
TauI	GCSGC	2 cut(s)	1145, 1148
TfiI	GAWTC	4 cut(s)	56, 278, 988, 1114
Tru1I	TTAA	3 cut(s)	308, 720, 876
Tru9I	TTAA	3 cut(s)	308, 720, 876
TscAI	CASTG	3 cut(s)	403, 714, 859
TseI	GCWGC	4 cut(s)	185, 796, 1090, 1124
TspDTI	ATGAA	5 cut(s)	17, 501, 789, 1079, 1092
TspGWI	ACGGA	3 cut(s)	545, 831, 905
TspRI	CASTG	3 cut(s)	403, 714, 859
Vha464I	CTTAAG	1 cut(s)	307
XapI	RAATTY	3 cut(s)	333, 446, 932
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	906
XmiI	GTMKAC	1 cut(s)	1080
XspI	CTAG	2 cut(s)	575, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.