Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

27390685 .. 27393014

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGAAGGAGGCAAATGGCTCGTCTCCTTCAACAGAGTTAGGGATGGAGTCCACCGCCTCCGGCCCTGCCATCTGGGAGCAAATTGAGCTTTCCGAGAGCTACCTTGTTTGCTCAATGTACGAGGAAGCAGCCTCATTAGCCTCCTCTATTCTGAAGCCTCTTTCACAACACAGTCAACACCTTGAAGCCGACGGCGACCGCTTCGAGCTCTACGACATGTCGGAATCGGCCGGTATGGTGCTTGTGCAATCCTTAAAACAACTTGGAAGGACATCAGAGATTCTGAATGAGCTCAAACCATTGTTTGCCTCTGTTGGTACTATCCCTGTTCAAGCTCTTCTCACTGGGGTATGTTTTTATATATCAGAAGGGCATTCCCTTGGTATTCAAGAATTTCTGGAAGAGTTCCTTAGCAGCTGGAGTTTTGTGGATGAACAATACTATGTTCTTTCTAGTACAGAAAAATTTGCGGATAATGCAAAAAGAAGTGATGAGCATTTTGTTCTGGGAGTTGACAAGTATGTAGAAGTAGTTGAGGTCTATGTGCTGAAGCTTCTGGGAACCATTTTGAATGATGTCAAGCTTGCAACCTCTTGGGTTGAGACTGCTGAATTACCTGAGGATAGGAGACAGGTACTTTTGAGAAGATTACACTCACTACATTCTGTTAAAGCCACAAACTCACCGCAAGGATCCCTGTCATCTTCACTGGAGGACAACTATGATGTGGAGCAGATAGCTGTGCCTGCCGGATATCCAAAAGCCAGATATGGAGGGACTGTTAAGAAACAAACAGTTTTCAATCTGTCCAAAAAGTTGGAACCATGTGTCTGGTGGTTCCGTACAATCACTCTGAAATTTGGTAGTGCTCGGGTGGTAATATCTAATGGAAAGATTGTCTCGGGATTCTTGATTTTGCTCATATATTACATTTTGCGGAGAAAACAAGCTACCATAAAGAGGACTATTCAGAGACAAGCTTTGACAATGAAGAAAGCTCTGGTGGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAATCCTTTAGCTGCTGTTCAACCTCTTGCCGCTGCAACACAAGGAGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

40.55

Weight (kDa)

5.8

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	57, 202, 473, 689, 940, 1071
AclWI	GGATC	2 cut(s)	690, 703
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	3 cut(s)	395, 467, 860
AcuI	CTGAAG	2 cut(s)	176, 572
AfaI	GTAC	5 cut(s)	122, 322, 460, 639, 847
AfiI	CCNNNNNNNGG	1 cut(s)	963
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	7 cut(s)	33, 188, 335, 392, 574, 805, 1061
AjnI	CCWGG	1 cut(s)	1035
Alw21I	GWGCWC	3 cut(s)	213, 297, 874
Alw26I	GTCTC	5 cut(s)	30, 599, 625, 907, 970
AlwI	GGATC	2 cut(s)	690, 703
Ama87I	CYCGRG	2 cut(s)	873, 904
AoxI	GGCC	3 cut(s)	64, 231, 1087
ApeKI	GCWGC	5 cut(s)	131, 417, 1018, 1052, 1073
ApoI	RAATTY	3 cut(s)	395, 467, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	678, 1051
AvaI	CYCGRG	2 cut(s)	873, 904
AxyI	CCTNAGG	1 cut(s)	621
BamHI	GGATCC	1 cut(s)	695
BanII	GRGCYC	2 cut(s)	213, 297
Bbv12I	GWGCWC	3 cut(s)	213, 297, 874
BbvI	GCAGC	5 cut(s)	143, 429, 1030, 1039, 1060
BccI	CCATC	2 cut(s)	40, 80
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	1037
BcoDI	GTCTC	5 cut(s)	30, 599, 625, 907, 970
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	6 cut(s)	132, 418, 1019, 1053, 1071, 1074
BlsI	GCNGC	6 cut(s)	133, 419, 1020, 1054, 1072, 1075
Bme1390I	CCNGG	1 cut(s)	1037
BmeT110I	CYCGRG	2 cut(s)	873, 904
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	4 cut(s)	565, 697, 825, 842
BmrFI	CCNGG	1 cut(s)	1037
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BpmI	CTGGAG	2 cut(s)	442, 734
Bpu10I	CCTNAGC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	963
Bse118I	RCCGGY	2 cut(s)	233, 1089
Bse1I	ACTGG	2 cut(s)	352, 717
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	1037
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	51, 439
BseLI	CCNNNNNNNGG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	352, 717
BseRI	GAGGAG	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	5 cut(s)	143, 429, 1030, 1039, 1060
Bsh1285I	CGRYCG	2 cut(s)	202, 234
BshFI	GGCC	3 cut(s)	66, 233, 1089
BsiEI	CGRYCG	2 cut(s)	202, 234
BsiHKAI	GWGCWC	3 cut(s)	213, 297, 874
BsiHKCI	CYCGRG	2 cut(s)	873, 904
BsiSI	CCGG	4 cut(s)	63, 234, 753, 1090
BslFI	GGGAC	1 cut(s)	793
BslI	CCNNNNNNNGG	1 cut(s)	963
BsmAI	GTCTC	5 cut(s)	30, 599, 625, 907, 970
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	793
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	66, 233, 1089
BsoBI	CYCGRG	2 cut(s)	873, 904
Bsp1286I	GDGCHC	3 cut(s)	213, 297, 874
Bsp143I	GATC	1 cut(s)	695
BspACI	CCGC	6 cut(s)	57, 202, 473, 689, 940, 1071
BspANI	GGCC	3 cut(s)	66, 233, 1089
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	565, 697, 825, 842
BspPI	GGATC	2 cut(s)	690, 703
BspQI	GCTCTTC	1 cut(s)	345
BsrFI	RCCGGY	2 cut(s)	233, 1089
BsrI	ACTGG	2 cut(s)	352, 717
BssAI	RCCGGY	2 cut(s)	233, 1089
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	695
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	1037
Bst4CI	ACNGT	3 cut(s)	176, 784, 799
Bst6I	CTCTTC	2 cut(s)	345, 399
BstC8I	GCNNGC	3 cut(s)	588, 750, 1023
BstDEI	CTNAG	2 cut(s)	413, 621
BstF5I	GGATG	2 cut(s)	51, 439
BstKTI	GATC	1 cut(s)	698
BstMAI	GTCTC	5 cut(s)	30, 599, 625, 907, 970
BstMBI	GATC	1 cut(s)	695
BstMCI	CGRYCG	2 cut(s)	202, 234
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 140, 479, 749
BstNI	CCWGG	1 cut(s)	1037
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	1035
BstV1I	GCAGC	5 cut(s)	143, 429, 1030, 1039, 1060
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	2 cut(s)	820, 834
BstYI	RGATCY	1 cut(s)	695
BstZI	CGGCCG	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	3 cut(s)	66, 233, 1089
BtsCI	GGATG	2 cut(s)	51, 439
BtsIMutI	CAGTG	2 cut(s)	345, 710
Cac8I	GCNNGC	3 cut(s)	588, 750, 1023
Cfr10I	RCCGGY	2 cut(s)	233, 1089
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	1035
Csp6I	GTAC	5 cut(s)	121, 321, 459, 638, 846
CviAII	CATG	2 cut(s)	220, 828
CviQI	GTAC	5 cut(s)	121, 321, 459, 638, 846
DdeI	CTNAG	2 cut(s)	413, 621
DpnI	GATC	1 cut(s)	697
DpnII	GATC	1 cut(s)	695
EaeI	YGGCCR	1 cut(s)	231
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	345, 399
EarI	CTCTTC	2 cut(s)	345, 399
Ecl136II	GAGCTC	2 cut(s)	211, 295
EclXI	CGGCCG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	213, 297
Eco32I	GATATC	1 cut(s)	758
Eco52I	CGGCCG	1 cut(s)	231
Eco53kI	GAGCTC	2 cut(s)	211, 295
Eco57I	CTGAAG	2 cut(s)	176, 572
Eco81I	CCTNAGG	1 cut(s)	621
Eco88I	CYCGRG	2 cut(s)	873, 904
EcoICRI	GAGCTC	2 cut(s)	211, 295
EcoRII	CCWGG	1 cut(s)	1035
EcoRV	GATATC	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	213, 297
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	2 cut(s)	223, 831
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	793
FatI	CATG	2 cut(s)	219, 827
Fnu4HI	GCNGC	6 cut(s)	132, 418, 1019, 1053, 1071, 1074
FokI	GGATG	2 cut(s)	58, 446
FriOI	GRGCYC	2 cut(s)	213, 297
Fsp4HI	GCNGC	6 cut(s)	132, 418, 1019, 1053, 1071, 1074
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	6 cut(s)	132, 418, 1019, 1053, 1071, 1074
GsuI	CTGGAG	2 cut(s)	442, 734
HaeIII	GGCC	3 cut(s)	66, 233, 1089
HapII	CCGG	4 cut(s)	63, 234, 753, 1090
Hin1II	CATG	2 cut(s)	223, 831
HincII	GTYRAC	2 cut(s)	179, 517
HindII	GTYRAC	2 cut(s)	179, 517
HindIII	AAGCTT	3 cut(s)	554, 584, 981
HinfI	GANTC	5 cut(s)	50, 227, 283, 909, 1042
HpaII	CCGG	4 cut(s)	63, 234, 753, 1090
HphI	GGTGA	2 cut(s)	678, 1051
Hpy166II	GTNNAC	4 cut(s)	54, 179, 517, 1009
Hpy188I	TCNGA	8 cut(s)	97, 156, 226, 280, 288, 370, 858, 975
Hpy188III	TCNNGA	4 cut(s)	392, 401, 906, 913
Hpy8I	GTNNAC	4 cut(s)	54, 179, 517, 1009
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	39, 264, 365
HpyCH4III	ACNGT	3 cut(s)	176, 784, 799
HpyCH4V	TGCA	5 cut(s)	250, 482, 590, 1025, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 140, 479, 749
HpyF3I	CTNAG	2 cut(s)	413, 621
Hsp92II	CATG	2 cut(s)	223, 831
Kzo9I	GATC	1 cut(s)	695
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	79, 733
Lsp1109I	GCAGC	5 cut(s)	143, 429, 1030, 1039, 1060
MabI	ACCWGGT	1 cut(s)	1035
MaeI	CTAG	1 cut(s)	456
MalI	GATC	1 cut(s)	697
MboI	GATC	1 cut(s)	695
MboII	GAAGA	5 cut(s)	332, 416, 660, 699, 1006
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	3 cut(s)	213, 297, 874
MluCI	AATT	5 cut(s)	84, 395, 467, 614, 860
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	204, 801
MseI	TTAA	3 cut(s)	257, 672, 786
MspA1I	CMGCKG	2 cut(s)	420, 1073
MspI	CCGG	4 cut(s)	63, 234, 753, 1090
MspR9I	CCNGG	1 cut(s)	1037
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	4 cut(s)	88, 140, 479, 749
NdeII	GATC	1 cut(s)	695
NlaIII	CATG	2 cut(s)	223, 831
NlaIV	GGNNCC	4 cut(s)	565, 697, 825, 842
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	4 cut(s)	227, 283, 909, 1042
PkrI	GCNGC	6 cut(s)	133, 419, 1020, 1054, 1072, 1075
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	2 cut(s)	213, 297
Psp6I	CCWGG	1 cut(s)	1035
PspGI	CCWGG	1 cut(s)	1035
PspN4I	GGNNCC	4 cut(s)	565, 697, 825, 842
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	420
RsaI	GTAC	5 cut(s)	122, 322, 460, 639, 847
RsaNI	GTAC	5 cut(s)	121, 321, 459, 638, 846
SacI	GAGCTC	2 cut(s)	213, 297
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	257, 672, 786
SatI	GCNGC	6 cut(s)	132, 418, 1019, 1053, 1071, 1074
Sau3AI	GATC	1 cut(s)	695
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	1037
SduI	GDGCHC	3 cut(s)	213, 297, 874
SexAI	ACCWGGT	1 cut(s)	1035
Sse9I	AATT	5 cut(s)	84, 395, 467, 614, 860
SsiI	CCGC	6 cut(s)	57, 202, 473, 689, 940, 1071
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	2 cut(s)	213, 297
StyD4I	CCNGG	1 cut(s)	1035
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	176, 784, 799
TaqI	TCGA	1 cut(s)	207
TasI	AATT	5 cut(s)	84, 395, 467, 614, 860
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	4 cut(s)	227, 283, 909, 1042
Tru1I	TTAA	3 cut(s)	257, 672, 786
Tru9I	TTAA	3 cut(s)	257, 672, 786
TscAI	CASTG	2 cut(s)	352, 717
TseI	GCWGC	5 cut(s)	131, 417, 1018, 1052, 1073
TspDTI	ATGAA	3 cut(s)	450, 1007, 1020
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	352, 717
XapI	RAATTY	3 cut(s)	395, 467, 860
XceI	RCATGY	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.