Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

11607654 .. 11611158

Gene Structure 3505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGAGTTCCAAAGGCTCCGGCCCTGCTGCAATCTGGGAAGAAGAAATTGAGCGTTCTGAGAGCTACCTTGTTTGCTCATTGTATGAGGAGGCAGCCTCATCAGCCTCCTCCATATTGAAGTGGCTTTCTAAGCATAGTGAAGACCTTGAAGCCGGAGACCCTTTTGAATTGTATGACATGTTGGAATCTGCTGGTATGGTGCTTGTCCAATCCTTAAAACAACTTGGAAGGACATCAGAAATTCTGAACGAGCTCAAACTATTATTTGCATCTGTTCCTACTATCCCTGTTCAACTTCTTCTCACTGGGGCATGCTTTTATATATCAGAAGGGCATTCTCATGGTATTCAAGAATTTCTGGAAGAGTTCCTTAGCAGGTGGAGTTTTGTCAATGAACAATATGTTCTTGTTGGTACAGGAGAAAATGCAGATGATGCAGAAAAATGTGATGGGCCTTTTCTTTTGGGAGTTGATAAGTATCTAGAAGTTGTTGAGGTACTTCTGAGAAGATTACACTCACTGCATTCTGTTAAAGCCACTACCTCATCACAAGGATCCTTCTCATCTTTGCTGGCGGATGAAGCTCATTCAACATGTTTGAAGGAGATAGCTGTGCTGGACAGATATCCAAAAACCAAATACCCTCCAAATGAAGAGACTGCTAAGAACCCAGCAGTTTTTAATTTATCTAAAAGATTGGAACCATGTGTCTGGTGGTTCCATACCATCACTCTGAAATTTGGTAGTGCTCGGGTGGTAATATCTAAAGGAAAGATTGTCCTGGGCTTCTTGATTCTGCTCATATATTATGTTTTCCAGAGAAAACAAGCTACCTTGAAGAGAATGCTCTGGGTAGACTTATGGCAGCTTGCATTTTCATACCAGGTGAATCCTTTAGCTGCTGTTCAACCTCTCGCAGCTGCAACGAGGGCGGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.12

Weight (kDa)

5.48

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	369
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	2 cut(s)	578, 935
AclWI	GGATC	2 cut(s)	552, 565
AcsI	RAATTY	3 cut(s)	243, 356, 740
AfaI	GTAC	2 cut(s)	418, 501
AflIII	ACRYGT	2 cut(s)	180, 596
AgsI	TTSAA	9 cut(s)	121, 152, 170, 296, 353, 594, 604, 841, 911
AjnI	CCWGG	2 cut(s)	783, 885
AluBI	AGCT	8 cut(s)	66, 256, 587, 614, 833, 871, 902, 923
AluI	AGCT	8 cut(s)	66, 256, 587, 614, 833, 871, 902, 923
Alw21I	GWGCWC	2 cut(s)	258, 754
Alw26I	GTCTC	2 cut(s)	153, 653
AlwI	GGATC	2 cut(s)	552, 565
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	3 cut(s)	22, 455, 937
ApeKI	GCWGC	6 cut(s)	29, 95, 868, 902, 920, 923
ApoI	RAATTY	3 cut(s)	243, 356, 740
AspS9I	GGNCC	3 cut(s)	23, 455, 937
AsuHPI	GGTGA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	2 cut(s)	258, 754
BbvI	GCAGC	6 cut(s)	16, 107, 880, 889, 910, 932
BccI	CCATC	2 cut(s)	446, 737
BciT130I	CCWGG	2 cut(s)	785, 887
BcoDI	GTCTC	2 cut(s)	153, 653
BfaI	CTAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	369
BisI	GCNGC	6 cut(s)	30, 96, 869, 903, 921, 924
BlsI	GCNGC	6 cut(s)	31, 97, 870, 904, 922, 925
Bme1390I	CCNGG	2 cut(s)	785, 887
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	3 cut(s)	23, 455, 937
BmiI	GGNNCC	4 cut(s)	19, 559, 705, 722
BmrFI	CCNGG	2 cut(s)	785, 887
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	281, 427
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	784
Bse1I	ACTGG	2 cut(s)	313, 940
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	785, 887
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	51, 497
BseNI	ACTGG	2 cut(s)	313, 940
BseRI	GAGGAG	2 cut(s)	100, 104
BseXI	GCAGC	6 cut(s)	16, 107, 880, 889, 910, 932
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	3 cut(s)	24, 457, 939
BsiHKAI	GWGCWC	2 cut(s)	258, 754
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	21, 156
BsmAI	GTCTC	2 cut(s)	153, 653
BsmI	GAATGC	3 cut(s)	337, 526, 852
BsnI	GGCC	3 cut(s)	24, 457, 939
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	258, 754
Bsp143I	GATC	1 cut(s)	557
BspACI	CCGC	2 cut(s)	578, 935
BspANI	GGCC	3 cut(s)	24, 457, 939
BspCNI	CTCAG	2 cut(s)	52, 498
BspLI	GGNNCC	4 cut(s)	19, 559, 705, 722
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	552, 565
BspTNI	GGTCTC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	313, 940
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	785, 887
Bst6I	CTCTTC	3 cut(s)	360, 651, 836
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	316, 576, 873, 937
BstDEI	CTNAG	5 cut(s)	60, 132, 374, 506, 666
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	2 cut(s)	153, 653
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 133, 437, 584, 932
BstNI	CCWGG	2 cut(s)	785, 887
BstNSI	RCATGY	3 cut(s)	184, 318, 600
BstSCI	CCNGG	2 cut(s)	783, 885
BstV1I	GCAGC	6 cut(s)	16, 107, 880, 889, 910, 932
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	24, 457, 939
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	306, 521
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	4 cut(s)	316, 576, 873, 937
Cfr13I	GGNCC	3 cut(s)	23, 455, 937
CsiI	ACCWGGT	1 cut(s)	885
Csp6I	GTAC	2 cut(s)	417, 500
CviAII	CATG	5 cut(s)	181, 315, 344, 597, 708
CviQI	GTAC	2 cut(s)	417, 500
DdeI	CTNAG	5 cut(s)	60, 132, 374, 506, 666
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
Eam1104I	CTCTTC	3 cut(s)	360, 651, 836
EarI	CTCTTC	3 cut(s)	360, 651, 836
EciI	GGCGGA	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	783, 885
EcoRV	GATATC	1 cut(s)	629
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	5 cut(s)	184, 318, 347, 600, 711
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	5 cut(s)	180, 314, 343, 596, 707
FauI	CCCGC	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	6 cut(s)	30, 96, 869, 903, 921, 924
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	6 cut(s)	30, 96, 869, 903, 921, 924
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	6 cut(s)	30, 96, 869, 903, 921, 924
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	24, 457, 939
HapII	CCGG	2 cut(s)	21, 156
Hin1II	CATG	5 cut(s)	184, 318, 347, 600, 711
HinfI	GANTC	3 cut(s)	188, 796, 892
HpaII	CCGG	2 cut(s)	21, 156
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	6 cut(s)	61, 241, 249, 331, 507, 738
Hpy188III	TCNNGA	5 cut(s)	353, 362, 485, 793, 820
Hpy8I	GTNNAC	1 cut(s)	859
HpyAV	CCTTC	4 cut(s)	225, 326, 571, 598
HpyCH4V	TGCA	7 cut(s)	32, 272, 431, 440, 526, 875, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 133, 437, 584, 932
HpyF3I	CTNAG	5 cut(s)	60, 132, 374, 506, 666
Hsp92II	CATG	5 cut(s)	184, 318, 347, 600, 711
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	6 cut(s)	16, 107, 880, 889, 910, 932
LweI	GCATC	2 cut(s)	281, 427
MabI	ACCWGGT	1 cut(s)	885
MaeI	CTAG	1 cut(s)	485
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MboII	GAAGA	8 cut(s)	53, 56, 155, 293, 377, 522, 668, 853
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	2 cut(s)	258, 754
MluCI	AATT	6 cut(s)	48, 170, 243, 356, 685, 740
MmeI	TCCRAC	1 cut(s)	165
MseI	TTAA	3 cut(s)	218, 534, 684
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	2 cut(s)	21, 156
MspR9I	CCNGG	2 cut(s)	785, 887
Mva1269I	GAATGC	3 cut(s)	337, 526, 852
MvaI	CCWGG	2 cut(s)	785, 887
MwoI	GCNNNNNNNGC	5 cut(s)	104, 133, 437, 584, 932
NdeII	GATC	1 cut(s)	557
NlaIII	CATG	5 cut(s)	184, 318, 347, 600, 711
NlaIV	GGNNCC	4 cut(s)	19, 559, 705, 722
NspI	RCATGY	3 cut(s)	184, 318, 600
PaeI	GCATGC	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	369
PciI	ACATGT	2 cut(s)	180, 596
PctI	GAATGC	3 cut(s)	337, 526, 852
PfeI	GAWTC	3 cut(s)	188, 796, 892
PkrI	GCNGC	6 cut(s)	31, 97, 870, 904, 922, 925
PscI	ACATGT	2 cut(s)	180, 596
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	783, 885
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	783, 885
PspN4I	GGNNCC	4 cut(s)	19, 559, 705, 722
PspPI	GGNCC	3 cut(s)	23, 455, 937
PsuI	RGATCY	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	418, 501
RsaNI	GTAC	2 cut(s)	417, 500
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	218, 534, 684
SatI	GCNGC	6 cut(s)	30, 96, 869, 903, 921, 924
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	3 cut(s)	23, 455, 937
ScrFI	CCNGG	2 cut(s)	785, 887
SduI	GDGCHC	2 cut(s)	258, 754
SexAI	ACCWGGT	1 cut(s)	885
SfaNI	GCATC	2 cut(s)	281, 427
SmiMI	CAYNNNNRTG	1 cut(s)	342
SphI	GCATGC	1 cut(s)	318
Sse9I	AATT	6 cut(s)	48, 170, 243, 356, 685, 740
SsiI	CCGC	2 cut(s)	578, 935
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	783, 885
TasI	AATT	6 cut(s)	48, 170, 243, 356, 685, 740
TfiI	GAWTC	3 cut(s)	188, 796, 892
Tru1I	TTAA	3 cut(s)	218, 534, 684
Tru9I	TTAA	3 cut(s)	218, 534, 684
TscAI	CASTG	2 cut(s)	313, 528
TseI	GCWGC	6 cut(s)	29, 95, 868, 902, 920, 923
TspDTI	ATGAA	4 cut(s)	411, 597, 669, 870
TspRI	CASTG	2 cut(s)	313, 528
XapI	RAATTY	3 cut(s)	243, 356, 740
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	3 cut(s)	184, 318, 600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	714
XmiI	GTMKAC	1 cut(s)	858
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.