Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

50437232 .. 50441492

Gene Structure 4261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG358100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAAAAGGGAGGCAGGAGAGAGGCAAAGCAATGGGTCGTCGTCCGAGGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGCAGCAAATTGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTCCTCAACATAGCGAGGATGATGATGATGATGATGACCTGTATGACATGTTGGAGTCGGCTGGTATGGTGCTTGTGCAATCTCTAAAACAACTGGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGTTTGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGTTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTATGAAGATCCTTCACCTGAGGGATGCCCAAAAGTGAAATATCCTCTAAATGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGGGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

385

Amino Acids

42.69

Weight (kDa)

5.52

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	2 cut(s)	608, 1071
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	3 cut(s)	753, 766, 788
AcsI	RAATTY	2 cut(s)	163, 458
AcuI	CTGAAG	1 cut(s)	941
AfaI	GTAC	4 cut(s)	51, 194, 702, 910
AfiI	CCNNNNNNNGG	3 cut(s)	689, 836, 1026
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	8 cut(s)	98, 398, 455, 593, 616, 637, 732, 1124
AjnI	CCWGG	3 cut(s)	146, 966, 1098
AjuI	GAANNNNNNNTTGG	2 cut(s)	923, 955
AluBI	AGCT	6 cut(s)	94, 215, 358, 1016, 1084, 1115
AluI	AGCT	6 cut(s)	94, 215, 358, 1016, 1084, 1115
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	164, 1033
AlwI	GGATC	3 cut(s)	753, 766, 788
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	2 cut(s)	130, 1150
ApeKI	GCWGC	7 cut(s)	151, 203, 972, 1081, 1115, 1136, 1139
ApoI	RAATTY	2 cut(s)	163, 458
Asp700I	GAANNNNTTC	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	792, 1114
AxyI	CCTNAGG	2 cut(s)	684, 804
BamHI	GGATCC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	2 cut(s)	227, 700
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	7 cut(s)	163, 190, 959, 1093, 1102, 1123, 1151
BccI	CCATC	3 cut(s)	112, 491, 551
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	3 cut(s)	148, 968, 1100
BcoDI	GTCTC	2 cut(s)	164, 1033
BfaI	CTAG	2 cut(s)	1067, 1112
BfmI	CTRYAG	1 cut(s)	1137
BisI	GCNGC	7 cut(s)	152, 204, 973, 1082, 1116, 1137, 1140
BlsI	GCNGC	7 cut(s)	153, 205, 974, 1083, 1117, 1138, 1141
Bme1390I	CCNGG	3 cut(s)	148, 968, 1100
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	6 cut(s)	51, 124, 133, 628, 760, 905
BmrFI	CCNGG	3 cut(s)	148, 968, 1100
BmrI	ACTGGG	3 cut(s)	134, 338, 420
BmsI	GCATC	2 cut(s)	758, 800
BmuI	ACTGGG	3 cut(s)	134, 338, 420
BpiI	GAAGAC	2 cut(s)	227, 700
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu10I	CCTNAGC	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	45, 966, 967
BsaWI	WCCGGW	3 cut(s)	101, 125, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 836, 1026
Bse1I	ACTGG	4 cut(s)	140, 333, 415, 1153
Bse21I	CCTNAGG	2 cut(s)	684, 804
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	3 cut(s)	148, 968, 1100
BseDI	CCNNGG	3 cut(s)	45, 966, 967
BseGI	GGATG	3 cut(s)	259, 502, 815
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	689, 836, 1026
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	80, 675, 698, 795
BseNI	ACTGG	4 cut(s)	140, 333, 415, 1153
BseRI	GAGGAG	2 cut(s)	64, 212
BseXI	GCAGC	7 cut(s)	163, 190, 959, 1093, 1102, 1123, 1151
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	2 cut(s)	132, 1152
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	102, 126, 341
BslI	CCNNNNNNNGG	3 cut(s)	689, 836, 1026
BsmAI	GTCTC	2 cut(s)	164, 1033
BsmI	GAATGC	2 cut(s)	439, 676
BsnI	GGCC	2 cut(s)	132, 1152
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	758, 793
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	132, 1152
BspCNI	CTCAG	4 cut(s)	79, 676, 699, 796
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	6 cut(s)	51, 124, 133, 628, 760, 905
BspMAI	CTGCAG	1 cut(s)	1141
BspPI	GGATC	3 cut(s)	753, 766, 788
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	140, 333, 415, 1153
BssECI	CCNNGG	3 cut(s)	45, 966, 967
BssMI	GATC	2 cut(s)	758, 793
BssNAI	GTATAC	1 cut(s)	609
Bst1107I	GTATAC	1 cut(s)	609
Bst2UI	CCWGG	3 cut(s)	148, 968, 1100
BstC8I	GCNNGC	2 cut(s)	1086, 1150
BstDEI	CTNAG	6 cut(s)	66, 476, 684, 707, 804, 849
BstENI	CCTNNNNNAGG	1 cut(s)	1024
BstF5I	GGATG	3 cut(s)	259, 502, 815
BstKTI	GATC	2 cut(s)	761, 796
BstMAI	GTCTC	2 cut(s)	164, 1033
BstMBI	GATC	2 cut(s)	758, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 746, 1145
BstNI	CCWGG	3 cut(s)	148, 968, 1100
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	146, 966, 1098
BstSFI	CTRYAG	1 cut(s)	1137
BstV1I	GCAGC	7 cut(s)	163, 190, 959, 1093, 1102, 1123, 1151
BstV2I	GAAGAC	2 cut(s)	227, 700
BstX2I	RGATCY	2 cut(s)	758, 793
BstXI	CCANNNNNNTGG	2 cut(s)	147, 897
BstYI	RGATCY	2 cut(s)	758, 793
BstZ17I	GTATAC	1 cut(s)	609
Bsu36I	CCTNAGG	2 cut(s)	684, 804
BsuRI	GGCC	2 cut(s)	132, 1152
BtsCI	GGATG	3 cut(s)	259, 502, 815
Cac8I	GCNNGC	2 cut(s)	1086, 1150
Cfr13I	GGNCC	1 cut(s)	131
CsiI	ACCWGGT	1 cut(s)	1098
Csp6I	GTAC	4 cut(s)	50, 193, 701, 909
CviAII	CATG	4 cut(s)	190, 283, 554, 891
CviQI	GTAC	4 cut(s)	50, 193, 701, 909
DdeI	CTNAG	6 cut(s)	66, 476, 684, 707, 804, 849
DpnI	GATC	2 cut(s)	760, 795
DpnII	GATC	2 cut(s)	758, 793
DraI	TTTAAA	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	941
Eco81I	CCTNAGG	2 cut(s)	684, 804
EcoICRI	GAGCTC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	1024
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	146, 966, 1098
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	4 cut(s)	193, 286, 557, 894
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 459, 491
FatI	CATG	4 cut(s)	189, 282, 553, 890
FblI	GTMKAC	2 cut(s)	608, 1071
Fnu4HI	GCNGC	7 cut(s)	152, 204, 973, 1082, 1116, 1137, 1140
FokI	GGATG	3 cut(s)	266, 509, 822
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	7 cut(s)	152, 204, 973, 1082, 1116, 1137, 1140
FspBI	CTAG	2 cut(s)	1067, 1112
GluI	GCNGC	7 cut(s)	152, 204, 973, 1082, 1116, 1137, 1140
GsaI	CCCAGC	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	132, 1152
HapII	CCGG	3 cut(s)	102, 126, 341
Hin1II	CATG	4 cut(s)	193, 286, 557, 894
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	290, 346, 979
HpaII	CCGG	3 cut(s)	102, 126, 341
HphI	GGTGA	2 cut(s)	792, 1114
Hpy166II	GTNNAC	5 cut(s)	107, 609, 646, 1072, 1105
Hpy188I	TCNGA	8 cut(s)	46, 169, 228, 351, 433, 708, 921, 1038
Hpy188III	TCNNGA	6 cut(s)	115, 126, 455, 464, 590, 667
Hpy8I	GTNNAC	5 cut(s)	107, 609, 646, 1072, 1105
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	327, 428, 772, 807
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	313, 536, 1003, 1088, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 746, 1145
HpyF3I	CTNAG	6 cut(s)	66, 476, 684, 707, 804, 849
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	193, 286, 557, 894
Kpn2I	TCCGGA	1 cut(s)	125
KpnI	GGTACC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	758, 793
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	7 cut(s)	163, 190, 959, 1093, 1102, 1123, 1151
LweI	GCATC	2 cut(s)	758, 800
MabI	ACCWGGT	1 cut(s)	1098
MaeI	CTAG	2 cut(s)	1067, 1112
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	760, 795
MboI	GATC	2 cut(s)	758, 793
MboII	GAAGA	5 cut(s)	227, 395, 705, 723, 803
MflI	RGATCY	2 cut(s)	758, 793
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	5 cut(s)	61, 156, 163, 458, 732
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	3 cut(s)	107, 267, 464
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	3 cut(s)	735, 866, 1022
MspI	CCGG	3 cut(s)	102, 126, 341
MspR9I	CCNGG	3 cut(s)	148, 968, 1100
Mva1269I	GAATGC	2 cut(s)	439, 676
MvaI	CCWGG	3 cut(s)	148, 968, 1100
MwoI	GCNNNNNNNGC	3 cut(s)	212, 746, 1145
NdeII	GATC	2 cut(s)	758, 793
NlaIII	CATG	4 cut(s)	193, 286, 557, 894
NlaIV	GGNNCC	6 cut(s)	51, 124, 133, 628, 760, 905
NspI	RCATGY	1 cut(s)	286
PasI	CCCWGGG	1 cut(s)	967
PciI	ACATGT	1 cut(s)	282
PctI	GAATGC	2 cut(s)	439, 676
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	346, 979
PkrI	GCNGC	7 cut(s)	153, 205, 974, 1083, 1117, 1138, 1141
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	146, 966, 1098
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	3 cut(s)	146, 966, 1098
PspN4I	GGNNCC	6 cut(s)	51, 124, 133, 628, 760, 905
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	1141
PsuI	RGATCY	2 cut(s)	758, 793
RsaI	GTAC	4 cut(s)	51, 194, 702, 910
RsaNI	GTAC	4 cut(s)	50, 193, 701, 909
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	735, 866, 1022
SatI	GCNGC	7 cut(s)	152, 204, 973, 1082, 1116, 1137, 1140
Sau3AI	GATC	2 cut(s)	758, 793
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	148, 968, 1100
SduI	GDGCHC	1 cut(s)	360
SexAI	ACCWGGT	1 cut(s)	1098
SfaNI	GCATC	2 cut(s)	758, 800
SfcI	CTRYAG	1 cut(s)	1137
Sse9I	AATT	5 cut(s)	61, 156, 163, 458, 732
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	2 cut(s)	1067, 1112
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	146, 966, 1098
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	114, 666, 875
TasI	AATT	5 cut(s)	61, 156, 163, 458, 732
TfiI	GAWTC	2 cut(s)	346, 979
Tru1I	TTAA	3 cut(s)	735, 866, 1022
Tru9I	TTAA	3 cut(s)	735, 866, 1022
TseI	GCWGC	7 cut(s)	151, 203, 972, 1081, 1115, 1136, 1139
TspDTI	ATGAA	4 cut(s)	17, 804, 1070, 1083
TspGWI	ACGGA	2 cut(s)	705, 896
XagI	CCTNNNNNAGG	1 cut(s)	1024
XapI	RAATTY	2 cut(s)	163, 458
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	897
XmiI	GTMKAC	2 cut(s)	608, 1071
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	2 cut(s)	1067, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.