Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Reverse (-)

29202358 .. 29207597

Gene Structure 5240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAGAGGGAGGCAGGAGAGAGACAAAGCAATGGGTCGTCATCATCTTCATCCGAAGTACCTCTTATCAATTCTCAGTCCTCCTCCCATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGCAACAAATTGAGAATTCCGGGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATACCGAGGATGATGATGATGACCTGTATGACATGTTGGAATCGGCAGAAGGGCATTCTCTTGCAGTTGGAGTTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGCATTGATAAGTATCTTGTAGTAGCTGAGGTGTATACTTTGAATGTGCTGGGAACCATTTTGAATAATGTTGACCTTGCTAACTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTAAACAATTACATACATCTTATGTTGGAGACAGCACCACGAAAAATTGATTTAGGTGGTTATATACTACTATACCACACAACGTACCTGGTGGATATTGACAGCGAGAAGGTTGGAAGAGTCTTGAAGCTCGACTCCATCAGGGGCGGTAACGCTTGGAAAGGCATGGACGTCCTGATCTTCGACACGACGTCGCAACATTCCAATCGTAGTCTTGGACGACTCCGTCGCGTTCATCAGTTCTATTTGTCTGTTCGAAGAAATGGATATCGGAAACCAGTTTTCCAGGCCAAAGAATGGAGAGTCTTCATTGAATACAGCGGAGCGCAAGTTGGCGACAAAATTTATTTCTGGCATCAGCATACATCTCTACAAGCACATCCACCCATTTTTGCTGTCGCTCAGCCTCTGCCACCACTGGGTCCAGAGGCCGAACAAGAAAAGCTACAACTTCATGAAAGATATTACAAGTCAGGAACTTACAAAGGCATCTTTAGCAAGCAATTCCAAATTTCAGCCAAACCAAAGCGGGCACTCGTATTTATATTTGTTCTCATTCTCATTCATGCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.73

Weight (kDa)

6.4

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	762
AatII	GACGTC	2 cut(s)	711, 731
AccB7I	CCANNNNNTGG	1 cut(s)	834
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	1 cut(s)	768
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	4 cut(s)	684, 858, 1066, 1108
AcsI	RAATTY	3 cut(s)	172, 879, 1047
AcyI	GRCGYC	2 cut(s)	708, 728
AfaI	GTAC	3 cut(s)	60, 203, 623
AfiI	CCNNNNNNNGG	3 cut(s)	527, 834, 956
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	5 cut(s)	107, 454, 475, 664, 851
AhdI	GACNNNNNGTC	1 cut(s)	727
AjnI	CCWGG	3 cut(s)	155, 624, 822
AluBI	AGCT	5 cut(s)	103, 224, 437, 667, 982
AluI	AGCT	5 cut(s)	103, 224, 437, 667, 982
Alw26I	GTCTC	2 cut(s)	16, 560
AlwNI	CAGNNNCTG	1 cut(s)	946
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	3 cut(s)	139, 825, 966
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	3 cut(s)	172, 879, 1047
Asp700I	GAANNNNTTC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	3 cut(s)	140, 180, 959
AsuC2I	CCSGG	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	793
AvaII	GGWCC	2 cut(s)	180, 959
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	1072
BbsI	GAAGAC	2 cut(s)	538, 835
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	5 cut(s)	96, 121, 329, 389, 683
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	157, 626, 824
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	16, 560
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	4 cut(s)	157, 178, 626, 824
Bme18I	GGWCC	2 cut(s)	180, 959
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	140, 180, 959
BmiI	GGNNCC	5 cut(s)	133, 142, 181, 466, 960
BmrFI	CCNGG	4 cut(s)	157, 178, 626, 824
BmrI	ACTGGG	2 cut(s)	143, 965
BmsI	GCATC	2 cut(s)	901, 1035
BmuI	ACTGGG	2 cut(s)	143, 965
BpiI	GAAGAC	2 cut(s)	538, 835
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	708, 728
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	2 cut(s)	110, 134
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 852, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 834, 956
Bse1I	ACTGG	3 cut(s)	149, 815, 960
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	157, 626, 824
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	5 cut(s)	50, 88, 268, 340, 916
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	527, 834, 956
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	89, 429, 513, 953
BseNI	ACTGG	3 cut(s)	149, 815, 960
BseRI	GAGGAG	2 cut(s)	73, 221
BseSI	GKGCMC	1 cut(s)	1072
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	3 cut(s)	141, 827, 968
BsiSI	CCGG	3 cut(s)	111, 135, 177
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	3 cut(s)	527, 834, 956
BsmAI	GTCTC	2 cut(s)	16, 560
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	2 cut(s)	307, 514
BsnI	GGCC	3 cut(s)	141, 827, 968
Bsp119I	TTCGAA	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	714
Bsp1720I	GCTNAGC	1 cut(s)	939
BspACI	CCGC	4 cut(s)	684, 858, 1066, 1108
BspANI	GGCC	3 cut(s)	141, 827, 968
BspCNI	CTCAG	4 cut(s)	88, 430, 514, 952
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	768
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	5 cut(s)	133, 142, 181, 466, 960
BspT104I	TTCGAA	1 cut(s)	793
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	149, 815, 960
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	714
BssNAI	GTATAC	1 cut(s)	447
BssNI	GRCGYC	2 cut(s)	708, 728
Bst1107I	GTATAC	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	157, 626, 824
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	2 cut(s)	708, 728
BstBI	TTCGAA	1 cut(s)	793
BstC8I	GCNNGC	3 cut(s)	1037, 1068, 1108
BstDEI	CTNAG	4 cut(s)	75, 438, 522, 939
BstF5I	GGATG	5 cut(s)	50, 88, 268, 340, 916
BstFNI	CGCG	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	1 cut(s)	717
BstMAI	GTCTC	2 cut(s)	16, 560
BstMBI	GATC	1 cut(s)	714
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 1032
BstNI	CCWGG	3 cut(s)	157, 626, 824
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	155, 176, 624, 822
BstSLI	GKGCMC	1 cut(s)	1072
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	538, 835
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	141, 827, 968
BtsCI	GGATG	5 cut(s)	50, 88, 268, 340, 916
BtsIMutI	CAGTG	1 cut(s)	953
Cac8I	GCNNGC	3 cut(s)	1037, 1068, 1108
CaiI	CAGNNNCTG	1 cut(s)	946
CciI	TCATGA	1 cut(s)	991
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	3 cut(s)	140, 180, 959
CsiI	ACCWGGT	1 cut(s)	624
Csp6I	GTAC	3 cut(s)	59, 202, 622
CviAII	CATG	6 cut(s)	199, 286, 392, 703, 992, 1103
CviQI	GTAC	3 cut(s)	59, 202, 622
DdeI	CTNAG	4 cut(s)	75, 438, 522, 939
DpnI	GATC	1 cut(s)	716
DpnII	GATC	1 cut(s)	714
DrdI	GACNNNNNNGTC	1 cut(s)	762
DriI	GACNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	180, 959
Eco81I	CCTNAGG	1 cut(s)	522
EcoO109I	RGGNCCY	2 cut(s)	140, 180
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	155, 624, 822
EcoRV	GATATC	1 cut(s)	806
FaeI	CATG	6 cut(s)	202, 289, 395, 706, 995, 1106
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	6 cut(s)	198, 285, 391, 702, 991, 1102
FauI	CCCGC	1 cut(s)	1059
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	5 cut(s)	37, 75, 275, 347, 903
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	3 cut(s)	141, 827, 968
HapII	CCGG	3 cut(s)	111, 135, 177
HhaI	GCGC	1 cut(s)	865
Hin1I	GRCGYC	2 cut(s)	708, 728
Hin1II	CATG	6 cut(s)	202, 289, 395, 706, 995, 1106
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	5 cut(s)	293, 657, 671, 759, 840
HpaII	CCGG	3 cut(s)	111, 135, 177
Hpy166II	GTNNAC	4 cut(s)	116, 447, 484, 541
Hpy188I	TCNGA	3 cut(s)	55, 237, 810
Hpy188III	TCNNGA	8 cut(s)	124, 135, 505, 661, 712, 962, 992, 1011
Hpy8I	GTNNAC	4 cut(s)	116, 447, 484, 541
Hpy99I	CGWCG	3 cut(s)	730, 733, 768
HpyAV	CCTTC	2 cut(s)	296, 640
HpyCH4IV	ACGT	4 cut(s)	241, 620, 708, 728
HpyCH4V	TGCA	2 cut(s)	317, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 1032
HpyF3I	CTNAG	4 cut(s)	75, 438, 522, 939
HpySE526I	ACGT	4 cut(s)	241, 620, 708, 728
Hsp92I	GRCGYC	2 cut(s)	708, 728
Hsp92II	CATG	6 cut(s)	202, 289, 395, 706, 995, 1106
HspAI	GCGC	1 cut(s)	863
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	200, 860
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	2 cut(s)	901, 1035
MabI	ACCWGGT	1 cut(s)	624
MaeII	ACGT	4 cut(s)	241, 620, 708, 728
MaeIII	GTNAC	2 cut(s)	151, 686
MalI	GATC	1 cut(s)	716
MboI	GATC	1 cut(s)	714
MboII	GAAGA	7 cut(s)	16, 39, 543, 666, 709, 807, 835
MhlI	GDGCHC	1 cut(s)	1072
MluCI	AATT	8 cut(s)	70, 165, 172, 544, 582, 879, 1040, 1047
MlyI	GAGTC	4 cut(s)	665, 666, 753, 849
MmeI	TCCRAC	5 cut(s)	116, 270, 301, 543, 631
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	858, 1110
MspI	CCGG	3 cut(s)	111, 135, 177
MspR9I	CCNGG	4 cut(s)	157, 178, 626, 824
Mva1269I	GAATGC	2 cut(s)	307, 514
MvaI	CCWGG	3 cut(s)	157, 626, 824
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	2 cut(s)	221, 1032
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	714
NlaIII	CATG	6 cut(s)	202, 289, 395, 706, 995, 1106
NlaIV	GGNNCC	5 cut(s)	133, 142, 181, 466, 960
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	793
PagI	TCATGA	1 cut(s)	991
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	2 cut(s)	307, 514
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	762
PflMI	CCANNNNNTGG	1 cut(s)	834
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	4 cut(s)	665, 665, 753, 848
PpsI	GAGTC	4 cut(s)	665, 665, 753, 848
PpuMI	RGGWCCY	1 cut(s)	180
PscI	ACATGT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	155, 624, 822
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	3 cut(s)	155, 624, 822
PspN4I	GGNNCC	5 cut(s)	133, 142, 181, 466, 960
PspPI	GGNCC	3 cut(s)	140, 180, 959
PspPPI	RGGWCCY	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	762
RsaI	GTAC	3 cut(s)	60, 203, 623
RsaNI	GTAC	3 cut(s)	59, 202, 622
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	714
Sau96I	GGNCC	3 cut(s)	140, 180, 959
SchI	GAGTC	4 cut(s)	665, 666, 753, 849
ScrFI	CCNGG	4 cut(s)	157, 178, 626, 824
SduI	GDGCHC	1 cut(s)	1072
SexAI	ACCWGGT	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	901, 1035
SfuI	TTCGAA	1 cut(s)	793
SinI	GGWCC	2 cut(s)	180, 959
Sse9I	AATT	8 cut(s)	70, 165, 172, 544, 582, 879, 1040, 1047
SsiI	CCGC	4 cut(s)	684, 858, 1066, 1108
StyD4I	CCNGG	4 cut(s)	155, 176, 624, 822
TaiI	ACGT	4 cut(s)	244, 623, 711, 731
TaqI	TCGA	5 cut(s)	123, 504, 669, 720, 793
TasI	AATT	8 cut(s)	70, 165, 172, 544, 582, 879, 1040, 1047
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	960
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	7 cut(s)	17, 39, 761, 835, 980, 1008, 1091
TspGWI	ACGGA	2 cut(s)	543, 752
TspRI	CASTG	1 cut(s)	960
Tth111I	GACNNNGTC	1 cut(s)	762
Van91I	CCANNNNNTGG	1 cut(s)	834
VpaK11BI	GGWCC	2 cut(s)	180, 959
XapI	RAATTY	3 cut(s)	172, 879, 1047
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	102
ZraI	GACGTC	2 cut(s)	709, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.