Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003594

Physical Location & Seq

Genomic Coordinates Forward (+)

45607825 .. 45611742

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGAGGGAGGCAGCAGAGAGGCAAAGCAATGGGTCATCGTCGTCTTCATCCGAGGTACCTCTTATCAATTCTCAGTCCTCCTCCTATCCAACTGAACAGCTTCAATCCGGTTCACAAGTCGAGATGGGTTCCGGAGGCCCCGACCCAGTAACCTGGCAGCAAATTGAGAATTCCGAGACCTACCTTGTCTGCTCCATGTACGAGGAGGCTGCCTCATTAGCTTCCTCTATTCTGAAACGTCTTTCTCAACATAACGAGGATGATGATGATGATGATGACCTGTATGACATGTTGGAGTCGGCTGGAATGGTGCTTGTGCAATCTCTAAAACAACTTGGAAGGACACCGGAGATTCTGAATGAGCTCAAACTACTATTTGCCTCCATTCCTGCTATCCCTGTTCAAGTTCTTCTTACTGGGGCTTGCTTTTATATTTCAGAAGGGCATTCTCTTGGTATTCAAGAATTTCTGGAAGTGTTCCTTAGCGGTTGGAGTTTTGTGGATGGAAAATGTTATGTTCTTGTTGGTAAAGAATACAATGCAGATTATACAAAAAGACATGATGGGCATTTTGTTTTGGGTATTGATAAGTATCTTGAAGTAGTTGAGGTGTATACTTTGAATGTGTTGGGAACCATTTTGAATGATGTTGACCTTGCTACCTCTTGGGTCGAGAATGCTAAAATACCTGAGGACGGAAGACAGGTACTTCTGAGAAGATTACACTCACTACATTCAATTAAAGCCACCAACGCATCACAAGGATCCTTCTCATCTTTGCTGGTGGATAACTATGAAGATCCTTCACCTGAGGGATGCCCAAAAGTGAAATATCCTCTAAATGGAGATACTGCTAAGAAACAAGCAGTTTTAAAGTTGTCGAAAAGATTAGAACCATGCCTCTGGTGGTTCCGTACCATTACTCTGAAGTTTGGGAATACTCGGTTGGTAATATCTAATGGAAAGATTGCCCTGGGCTGCTTGATTCTGCTCATATCTTATGTTTTGCAGAGAAAACGAGCTACCTTAAAGAGGATTGTTCAGAGACAAGCCTTGTCAATGAAAAATGCTCTAGTAGACTTGTGGCAGCTTGCATTTTCATACCAGGTGAACCCTCTAGCTGCTGTTCAACCTCTGGGTGCTGCAGCAAGGGCAGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0006810 GO:0008150 GO:0031974 GO:0031981 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043574 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

42.95

Weight (kDa)

5.52

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10572 AT3G10572 AT3G10572
fragaria_vesca	FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940 FvH4_6g26940
malus_domestica	MD07G1305000.v1.1
prunus_persica	Prupe.3G126100_v2.0.a1 Prupe.4G276600_v2.0.a1 Prupe.4G276600_v2.0.a1
pyrus_communis	pycom07g27840
rosa_chinensis	RchiOBHm_Chr2g0128761
rosa_laevigata	RLG00000019020
rosa_multiflora	Rmu_sc0000410.1_g000015 Rmu_sc0005514.1_g000009
rosa_roxburghii	Rroxscaffold_180G00433540 Rroxscaffold_2G00115310 Rroxscaffold_2G00115340 Rroxscaffold_2G00115830 Rroxscaffold_3G00228610 Rroxscaffold_4G00313880 Rroxscaffold_5G00352120 Rroxscaffold_7G00189460
rosa_rugosa	Rorug02G0280200
rosa_samantha	Rh2AG333800 Rh2BG341400 Rh2CG320400 Rh2DG358100 Rh5CG084700 Rh5DG072800
rosa_wichuraiana	Rw2G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	617, 1080
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	3 cut(s)	762, 775, 797
AcsI	RAATTY	2 cut(s)	172, 467
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	4 cut(s)	60, 203, 711, 919
AfiI	CCNNNNNNNGG	3 cut(s)	698, 845, 1035
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	8 cut(s)	107, 407, 464, 602, 625, 646, 741, 1133
AjnI	CCWGG	3 cut(s)	155, 975, 1107
AjuI	GAANNNNNNNTTGG	2 cut(s)	932, 964
AluBI	AGCT	6 cut(s)	103, 224, 367, 1025, 1093, 1124
AluI	AGCT	6 cut(s)	103, 224, 367, 1025, 1093, 1124
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	173, 1042
AlwI	GGATC	3 cut(s)	762, 775, 797
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	2 cut(s)	139, 1159
ApeKI	GCWGC	8 cut(s)	14, 160, 212, 981, 1090, 1124, 1145, 1148
ApoI	RAATTY	2 cut(s)	172, 467
Asp700I	GAANNNNTTC	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	801, 1123
AxyI	CCTNAGG	2 cut(s)	693, 813
BamHI	GGATCC	1 cut(s)	767
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	39, 709
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	8 cut(s)	26, 172, 199, 968, 1102, 1111, 1132, 1160
BccI	CCATC	3 cut(s)	121, 500, 560
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	3 cut(s)	157, 977, 1109
BcoDI	GTCTC	2 cut(s)	173, 1042
BfaI	CTAG	2 cut(s)	1076, 1121
BfmI	CTRYAG	1 cut(s)	1146
BisI	GCNGC	8 cut(s)	15, 161, 213, 982, 1091, 1125, 1146, 1149
BlsI	GCNGC	8 cut(s)	16, 162, 214, 983, 1092, 1126, 1147, 1150
Bme1390I	CCNGG	3 cut(s)	157, 977, 1109
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	6 cut(s)	60, 133, 142, 637, 769, 914
BmrFI	CCNGG	3 cut(s)	157, 977, 1109
BmrI	ACTGGG	2 cut(s)	143, 429
BmsI	GCATC	2 cut(s)	767, 809
BmuI	ACTGGG	2 cut(s)	143, 429
BpiI	GAAGAC	2 cut(s)	39, 709
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	54, 975, 976
BsaWI	WCCGGW	3 cut(s)	110, 134, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	698, 845, 1035
Bse1I	ACTGG	3 cut(s)	149, 424, 1162
Bse21I	CCTNAGG	2 cut(s)	693, 813
Bse3DI	GCAATG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	157, 977, 1109
BseDI	CCNNGG	3 cut(s)	54, 975, 976
BseGI	GGATG	4 cut(s)	50, 268, 511, 824
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	698, 845, 1035
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	4 cut(s)	89, 684, 707, 804
BseNI	ACTGG	3 cut(s)	149, 424, 1162
BseRI	GAGGAG	2 cut(s)	73, 221
BseXI	GCAGC	8 cut(s)	26, 172, 199, 968, 1102, 1111, 1132, 1160
BshFI	GGCC	2 cut(s)	141, 1161
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	111, 135, 350
BslI	CCNNNNNNNGG	3 cut(s)	698, 845, 1035
BsmAI	GTCTC	2 cut(s)	173, 1042
BsmI	GAATGC	2 cut(s)	448, 685
BsnI	GGCC	2 cut(s)	141, 1161
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	767, 802
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	2 cut(s)	141, 1161
BspCNI	CTCAG	4 cut(s)	88, 685, 708, 805
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	6 cut(s)	60, 133, 142, 637, 769, 914
BspMAI	CTGCAG	1 cut(s)	1150
BspPI	GGATC	3 cut(s)	762, 775, 797
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	149, 424, 1162
BssECI	CCNNGG	3 cut(s)	54, 975, 976
BssMI	GATC	2 cut(s)	767, 802
BssNAI	GTATAC	1 cut(s)	618
Bst1107I	GTATAC	1 cut(s)	618
Bst2UI	CCWGG	3 cut(s)	157, 977, 1109
BstC8I	GCNNGC	3 cut(s)	427, 1095, 1159
BstDEI	CTNAG	6 cut(s)	75, 485, 693, 716, 813, 858
BstENI	CCTNNNNNAGG	1 cut(s)	1033
BstF5I	GGATG	4 cut(s)	50, 268, 511, 824
BstKTI	GATC	2 cut(s)	770, 805
BstMAI	GTCTC	2 cut(s)	173, 1042
BstMBI	GATC	2 cut(s)	767, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 755, 1154
BstNI	CCWGG	3 cut(s)	157, 977, 1109
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	155, 975, 1107
BstSFI	CTRYAG	1 cut(s)	1146
BstV1I	GCAGC	8 cut(s)	26, 172, 199, 968, 1102, 1111, 1132, 1160
BstV2I	GAAGAC	2 cut(s)	39, 709
BstX2I	RGATCY	2 cut(s)	767, 802
BstXI	CCANNNNNNTGG	2 cut(s)	156, 906
BstYI	RGATCY	2 cut(s)	767, 802
BstZ17I	GTATAC	1 cut(s)	618
Bsu36I	CCTNAGG	2 cut(s)	693, 813
BsuRI	GGCC	2 cut(s)	141, 1161
BtsCI	GGATG	4 cut(s)	50, 268, 511, 824
Cac8I	GCNNGC	3 cut(s)	427, 1095, 1159
Cfr13I	GGNCC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	1107
Csp6I	GTAC	4 cut(s)	59, 202, 710, 918
CviAII	CATG	4 cut(s)	199, 292, 563, 900
CviQI	GTAC	4 cut(s)	59, 202, 710, 918
DdeI	CTNAG	6 cut(s)	75, 485, 693, 716, 813, 858
DpnI	GATC	2 cut(s)	769, 804
DpnII	GATC	2 cut(s)	767, 802
DraI	TTTAAA	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	950
Eco81I	CCTNAGG	2 cut(s)	693, 813
EcoICRI	GAGCTC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	1033
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	155, 975, 1107
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	4 cut(s)	202, 295, 566, 903
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 468, 500
FatI	CATG	4 cut(s)	198, 291, 562, 899
FblI	GTMKAC	2 cut(s)	617, 1080
Fnu4HI	GCNGC	8 cut(s)	15, 161, 213, 982, 1091, 1125, 1146, 1149
FokI	GGATG	4 cut(s)	37, 275, 518, 831
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	8 cut(s)	15, 161, 213, 982, 1091, 1125, 1146, 1149
FspBI	CTAG	2 cut(s)	1076, 1121
GluI	GCNGC	8 cut(s)	15, 161, 213, 982, 1091, 1125, 1146, 1149
HaeIII	GGCC	2 cut(s)	141, 1161
HapII	CCGG	3 cut(s)	111, 135, 350
Hin1II	CATG	4 cut(s)	202, 295, 566, 903
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	3 cut(s)	299, 355, 988
HpaII	CCGG	3 cut(s)	111, 135, 350
HphI	GGTGA	2 cut(s)	801, 1123
Hpy166II	GTNNAC	5 cut(s)	116, 618, 655, 1081, 1114
Hpy188I	TCNGA	8 cut(s)	55, 178, 237, 360, 442, 717, 930, 1047
Hpy188III	TCNNGA	6 cut(s)	124, 135, 464, 473, 599, 676
Hpy8I	GTNNAC	5 cut(s)	116, 618, 655, 1081, 1114
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	336, 437, 781, 816
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	322, 545, 1012, 1097, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 755, 1154
HpyF3I	CTNAG	6 cut(s)	75, 485, 693, 716, 813, 858
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	4 cut(s)	202, 295, 566, 903
Kpn2I	TCCGGA	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	767, 802
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	8 cut(s)	26, 172, 199, 968, 1102, 1111, 1132, 1160
LweI	GCATC	2 cut(s)	767, 809
MabI	ACCWGGT	1 cut(s)	1107
MaeI	CTAG	2 cut(s)	1076, 1121
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	769, 804
MboI	GATC	2 cut(s)	767, 802
MboII	GAAGA	6 cut(s)	16, 39, 404, 714, 732, 812
MflI	RGATCY	2 cut(s)	767, 802
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	5 cut(s)	70, 165, 172, 467, 741
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	3 cut(s)	116, 276, 473
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	3 cut(s)	744, 875, 1031
MspI	CCGG	3 cut(s)	111, 135, 350
MspR9I	CCNGG	3 cut(s)	157, 977, 1109
Mva1269I	GAATGC	2 cut(s)	448, 685
MvaI	CCWGG	3 cut(s)	157, 977, 1109
MwoI	GCNNNNNNNGC	3 cut(s)	221, 755, 1154
NdeII	GATC	2 cut(s)	767, 802
NlaIII	CATG	4 cut(s)	202, 295, 566, 903
NlaIV	GGNNCC	6 cut(s)	60, 133, 142, 637, 769, 914
NspI	RCATGY	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	976
PciI	ACATGT	1 cut(s)	291
PctI	GAATGC	2 cut(s)	448, 685
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	355, 988
PkrI	GCNGC	8 cut(s)	16, 162, 214, 983, 1092, 1126, 1147, 1150
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PscI	ACATGT	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	3 cut(s)	155, 975, 1107
PspGI	CCWGG	3 cut(s)	155, 975, 1107
PspN4I	GGNNCC	6 cut(s)	60, 133, 142, 637, 769, 914
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	1150
PsuI	RGATCY	2 cut(s)	767, 802
RsaI	GTAC	4 cut(s)	60, 203, 711, 919
RsaNI	GTAC	4 cut(s)	59, 202, 710, 918
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	744, 875, 1031
SatI	GCNGC	8 cut(s)	15, 161, 213, 982, 1091, 1125, 1146, 1149
Sau3AI	GATC	2 cut(s)	767, 802
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	157, 977, 1109
SduI	GDGCHC	1 cut(s)	369
SexAI	ACCWGGT	1 cut(s)	1107
SfaNI	GCATC	2 cut(s)	767, 809
SfcI	CTRYAG	1 cut(s)	1146
Sse9I	AATT	5 cut(s)	70, 165, 172, 467, 741
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	2 cut(s)	1076, 1121
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	155, 975, 1107
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	3 cut(s)	123, 675, 884
TasI	AATT	5 cut(s)	70, 165, 172, 467, 741
TfiI	GAWTC	2 cut(s)	355, 988
Tru1I	TTAA	3 cut(s)	744, 875, 1031
Tru9I	TTAA	3 cut(s)	744, 875, 1031
TseI	GCWGC	8 cut(s)	14, 160, 212, 981, 1090, 1124, 1145, 1148
TspDTI	ATGAA	5 cut(s)	17, 39, 813, 1079, 1092
TspGWI	ACGGA	2 cut(s)	714, 905
XagI	CCTNNNNNAGG	1 cut(s)	1033
XapI	RAATTY	2 cut(s)	172, 467
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	906
XmiI	GTMKAC	2 cut(s)	617, 1080
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	2 cut(s)	1076, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.