AT3G10640

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003138
Physical Location & Seq
Reverse (-)
3323271 .. 3325085
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10640.1

Sequence Viewer

Length: 708 bp
ATGAGGAGAGTTTTCGGCGCGAAAAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGCCTCTGATCGGATAAATAAAAGAGGAGATTCGGTAGAAGATAAGATAAAGAAGCTTGATGTTGAGCTCTGCAAATACAAAGAACAGCTCAAAAAGACCAGACCTGGTCCTGCTCAAGAAGCTGTCAAAGCTCGTGCTATGCGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCGACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAACTATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGATGAAAACCGTCAAGATTCAAGATATTGATAATTTACAAGACGAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCTTAACTTGCCTGCAGCACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAA

Protein Analysis

235

Amino Acids

26.17

Weight (kDa)

4.78

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 12 - 209 2.6e-50 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 237
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 2 cut(s) 432, 665
AcuI CTGAAG 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 66, 481
AgsI TTSAA 5 cut(s) 262, 349, 377, 437, 515
AjnI CCWGG 1 cut(s) 160
Alw21I GWGCWC 3 cut(s) 126, 637, 652
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 417
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 2 cut(s) 432, 665
Asp700I GAANNNNTTC 1 cut(s) 553
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 701
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 3 cut(s) 126, 637, 652
BauI CACGAG 2 cut(s) 189, 687
Bbv12I GWGCWC 3 cut(s) 126, 637, 652
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 1 cut(s) 623
BccI CCATC 4 cut(s) 400, 409, 464, 539
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 609
BisI GCNGC 2 cut(s) 285, 612
BlsI GCNGC 2 cut(s) 286, 613
Bme1390I CCNGG 2 cut(s) 162, 701
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 162, 701
BmsI GCATC 3 cut(s) 46, 292, 496
BplI GAGNNNNNCTC 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 651, 657
BpuEI CTTGAG 2 cut(s) 156, 191
BpuMI CCSGG 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 700
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 481
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 700
BseGI GGATG 3 cut(s) 61, 424, 490
BseLI CCNNNNNNNGG 2 cut(s) 66, 481
BseMII CTCAG 2 cut(s) 648, 665
BseRI GAGGAG 3 cut(s) 19, 30, 96
BseXI GCAGC 1 cut(s) 623
Bsh1236I CGCG 2 cut(s) 20, 237
BshFI GGCC 1 cut(s) 474
BsiHKAI GWGCWC 3 cut(s) 126, 637, 652
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 2 cut(s) 66, 481
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 126, 637, 652
Bsp143I GATC 3 cut(s) 64, 268, 409
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 2 cut(s) 649, 664
BspFNI CGCG 2 cut(s) 20, 237
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 1 cut(s) 417
BspQI GCTCTTC 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 700
BssMI GATC 3 cut(s) 64, 268, 409
BssSI CACGAG 2 cut(s) 189, 687
Bst2BI CACGAG 2 cut(s) 189, 687
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 596, 609
BstDEI CTNAG 2 cut(s) 651, 657
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 3 cut(s) 61, 424, 490
BstFNI CGCG 2 cut(s) 20, 237
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 67, 271, 412
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 3 cut(s) 64, 268, 409
BstMWI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 160, 699
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 2 cut(s) 20, 237
BstV1I GCAGC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 3 cut(s) 61, 424, 490
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 2 cut(s) 596, 609
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 160
CviAII CATG 4 cut(s) 241, 493, 523, 641
DdeI CTNAG 2 cut(s) 651, 657
DpnI GATC 3 cut(s) 66, 270, 411
DpnII GATC 3 cut(s) 64, 268, 409
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
Ecl136II GAGCTC 3 cut(s) 124, 635, 650
Eco24I GRGCYC 3 cut(s) 126, 637, 652
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 3 cut(s) 124, 635, 650
Eco57I CTGAAG 1 cut(s) 309
EcoICRI GAGCTC 3 cut(s) 124, 635, 650
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 3 cut(s) 126, 637, 652
FaeI CATG 4 cut(s) 244, 496, 526, 644
FaiI YATR 8 cut(s) 197, 225, 242, 249, 317, 494, 524, 642
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FatI CATG 4 cut(s) 240, 492, 522, 640
Fnu4HI GCNGC 2 cut(s) 285, 612
FokI GGATG 3 cut(s) 68, 431, 497
FriOI GRGCYC 3 cut(s) 126, 637, 652
Fsp4HI GCNGC 2 cut(s) 285, 612
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 285, 612
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 700
HhaI GCGC 1 cut(s) 20
Hin1II CATG 4 cut(s) 244, 496, 526, 644
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 4 cut(s) 86, 294, 373, 440
HpaII CCGG 1 cut(s) 700
Hpy188I TCNGA 5 cut(s) 64, 69, 255, 414, 430
Hpy188III TCNNGA 8 cut(s) 53, 173, 266, 370, 377, 437, 467, 512
HpyAV CCTTC 3 cut(s) 221, 284, 564
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 129, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
HpyF3I CTNAG 2 cut(s) 651, 657
Hsp92II CATG 4 cut(s) 244, 496, 526, 644
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 3 cut(s) 64, 268, 409
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 3 cut(s) 453, 632, 640
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 3 cut(s) 46, 292, 496
MabI ACCWGGT 1 cut(s) 160
MalI GATC 3 cut(s) 66, 270, 411
MboI GATC 3 cut(s) 64, 268, 409
MboII GAAGA 3 cut(s) 107, 226, 657
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 3 cut(s) 126, 637, 652
MluCI AATT 3 cut(s) 388, 432, 665
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 7 cut(s) 48, 51, 70, 74, 475, 500, 652
MroXI GAANNNNTTC 1 cut(s) 553
MseI TTAA 2 cut(s) 600, 706
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 1 cut(s) 700
MspR9I CCNGG 2 cut(s) 162, 701
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 2 cut(s) 20, 237
MwoI GCNNNNNNNGC 4 cut(s) 176, 185, 515, 604
NciI CCSGG 1 cut(s) 701
NdeII GATC 3 cut(s) 64, 268, 409
NlaIII CATG 4 cut(s) 244, 496, 526, 644
NspI RCATGY 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 553
PfeI GAWTC 3 cut(s) 86, 373, 440
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 286, 613
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 3 cut(s) 126, 637, 652
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 409
PsyI GACNNNGTC 1 cut(s) 162
SacI GAGCTC 3 cut(s) 126, 637, 652
SapI GCTCTTC 1 cut(s) 640
SaqAI TTAA 2 cut(s) 600, 706
SatI GCNGC 2 cut(s) 285, 612
Sau3AI GATC 3 cut(s) 64, 268, 409
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 162, 701
SduI GDGCHC 3 cut(s) 126, 637, 652
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 3 cut(s) 46, 292, 496
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 171, 206
SmoI CTYRAG 2 cut(s) 171, 206
Sse9I AATT 3 cut(s) 388, 432, 665
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 463
SstI GAGCTC 3 cut(s) 126, 637, 652
StyD4I CCNGG 2 cut(s) 160, 699
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 267
TaqII GACCGA 1 cut(s) 551
TasI AATT 3 cut(s) 388, 432, 665
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 3 cut(s) 86, 373, 440
Tru1I TTAA 2 cut(s) 600, 706
Tru9I TTAA 2 cut(s) 600, 706
TscAI CASTG 1 cut(s) 687
TseI GCWGC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 240, 267, 374
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 687
Tth111I GACNNNGTC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 2 cut(s) 432, 665
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.